View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18105_low_4 (Length: 648)
Name: NF18105_low_4
Description: NF18105
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18105_low_4 |
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Alignment Details
Target: chr7 (Bit Score: 473; Significance: 0; HSPs: 8)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 473; E-Value: 0
Query Start/End: Original strand, 17 - 633
Target Start/End: Original strand, 35789815 - 35790407
Alignment:
| Q |
17 |
cagaatcgtcccagtttatcacattgggatgcagacacatatatttcttgacttctattatctttcgccatggtactgagccaatcgaagcacaaaactt |
116 |
Q |
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|||||||||||||||||| |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35789815 |
cagaatcgtcccagtttaccacattgggatgtagacacatatatttcttgacttctattatctttcgccatggtactgagccaatcgaagcacaaaactt |
35789914 |
T |
|
| Q |
117 |
cttttcccacaaaggcactgttggtaaccaattatctgttagcaaaaaagaataaatagaatcaattg--atatctacttgaacatagccaaaatcaaga |
214 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
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| T |
35789915 |
cttttcccacaaaggcactgttggtaaccaattatctgttagcaaaaaagaataaatagaatcaattgatatatctacttgaacatagccaaaatcaaga |
35790014 |
T |
|
| Q |
215 |
cattataagatcatcaaaatataacaccataatcaaaacagtttcatgtatgataagttgcatataacaattaaccaatttaatgagatagggttttgtt |
314 |
Q |
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||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||| |
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| T |
35790015 |
cattataag---atcaaaatataacaccataatcaaaacagtttcatgtatgataagttgcatataac-actaaccaatttaatgagatagggttttgtt |
35790110 |
T |
|
| Q |
315 |
tataatgtgtcacgataagatttcaactcacccctcttttttctattatgcgtcgatacaaattaaaaggaaaagagaaaataaatacagtttgacatca |
414 |
Q |
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|| |||||||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||||| |||||||||||||| |
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| T |
35790111 |
taaaatgtgtcacgataagatttcaac------------------ttatgcatcgatacaaattaaaaggaaaagagaaaataaaaacagtttgacatca |
35790192 |
T |
|
| Q |
415 |
aagagtaaatccatgcaaaaactgaagaatgaataaaagcaaaaggaaagaaactaacgttgtttttcgttatacgatgatgataatcggtaagccatta |
514 |
Q |
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|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35790193 |
aagagt-aatccatgcaaaaactgaagaatgaataaaagcaaaaggaaagaaactaacgttgtttttcgttatacgatgatgataatcggtaagccatta |
35790291 |
T |
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| Q |
515 |
tgacgatgatgttggtttggaacacaaacaaagacagtgttctgagttttctttctctcttgccttccaccaaatattacttcaaatcacttgtactatc |
614 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |||||| |||| |
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| T |
35790292 |
tgacgatgatgttggtttggaacacaaacaaagacagtgttctgaggtttctttctctcttgccttccaccaaatattacttcaaaccacttg---tatc |
35790388 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 103; E-Value: 6e-51
Query Start/End: Original strand, 17 - 187
Target Start/End: Original strand, 35761025 - 35761195
Alignment:
| Q |
17 |
cagaatcgtcccagtttatcacattgggatgcagacacatatatttcttgacttctattatctttcgccatggtactgagccaatcgaagcacaaaactt |
116 |
Q |
| |
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|||| ||||||||||||| |||||||||||||||| ||||||| |||||| ||||||||| |||||||||||| |||||||||| ||| |||||||||| |
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| T |
35761025 |
cagagtcgtcccagtttaccacattgggatgcagatacatatacttcttgccttctattacctttcgccatggaactgagccaaccgattcacaaaactt |
35761124 |
T |
|
| Q |
117 |
cttttcccacaaaggcactgttggtaaccaattatctgttagcaaaaaagaataaatagaatcaattgata |
187 |
Q |
| |
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|||||||||||||||||||||||| |||| |||||||| | | |||| |||||||||||||||||||||| |
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| T |
35761125 |
cttttcccacaaaggcactgttggaaacctattatctgcgaaccaaaaggaataaatagaatcaattgata |
35761195 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 87; E-Value: 2e-41
Query Start/End: Original strand, 17 - 187
Target Start/End: Original strand, 35799458 - 35799627
Alignment:
| Q |
17 |
cagaatcgtcccagtttatcacattgggatgcagacacatatatttcttgacttctattatctttcgccatggtactgagccaatcgaagcacaaaactt |
116 |
Q |
| |
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|||| ||||||||||||| ||| |||||||||| | |||| || ||||| ||||||||| |||||||||||| |||||||| | |||||||||||||| |
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| T |
35799458 |
cagagtcgtcccagtttaccactttgggatgcatatacatgtacctcttgtcttctattagctttcgccatggaactgagcccaccgaagcacaaaactg |
35799557 |
T |
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| Q |
117 |
cttttcccacaaaggcactgttggtaaccaattatctgttagcaaaaaagaataaatagaatcaattgata |
187 |
Q |
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|||||||||||||||||||||||| |||| ||||||||| | | |||||||||||||||||||||||||| |
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| T |
35799558 |
cttttcccacaaaggcactgttggaaacctattatctgtgaac-caaaagaataaatagaatcaattgata |
35799627 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 76; E-Value: 8e-35
Query Start/End: Original strand, 25 - 136
Target Start/End: Original strand, 35755875 - 35755986
Alignment:
| Q |
25 |
tcccagtttatcacattgggatgcagacacatatatttcttgacttctattatctttcgccatggtactgagccaatcgaagcacaaaacttcttttccc |
124 |
Q |
| |
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|||||||||| |||||||||||| ||| ||||||| ||||||||||||||| |||||||||||| |||| |||||||||||||||||||||||||||| |
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| T |
35755875 |
tcccagtttaccacattgggatgtagagacatatacctcttgacttctattagctttcgccatggaactgcaccaatcgaagcacaaaacttcttttccc |
35755974 |
T |
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| Q |
125 |
acaaaggcactg |
136 |
Q |
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|||||||||||| |
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| T |
35755975 |
acaaaggcactg |
35755986 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 63; E-Value: 5e-27
Query Start/End: Original strand, 17 - 183
Target Start/End: Original strand, 35785963 - 35786129
Alignment:
| Q |
17 |
cagaatcgtcccagtttatcacattgggatgcagacacatatatttcttgacttctattatctttcgccatggtactgagccaatcgaagcacaaaactt |
116 |
Q |
| |
|
|||| |||| |||||||| ||| ||||| || ||||||||||| || ||| ||||||||| ||||| |||||| ||||| |||| |||| ||||||||| |
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| T |
35785963 |
cagagtcgttccagtttaccactttggggtgaagacacatatacttattgccttctattacctttctccatggaactgaaccaaccgaattacaaaactt |
35786062 |
T |
|
| Q |
117 |
cttttcccacaaaggcactgttggtaaccaattatctgttagcaaaaaagaataaatagaatcaatt |
183 |
Q |
| |
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|||||||||| ||||||||||||| |||| |||| |||| | | |||| ||||| || ||||||||| |
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| T |
35786063 |
cttttcccacgaaggcactgttggaaacctattagctgtgaaccaaaaggaatacatggaatcaatt |
35786129 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 385 - 443
Target Start/End: Original strand, 35800337 - 35800394
Alignment:
| Q |
385 |
aaaagagaaaataaatacagtttgacatcaaagagtaaatccatgcaaaaactgaagaa |
443 |
Q |
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||||||||||||||| ||||||| |||||||||| | |||||||||||||||||||||| |
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| T |
35800337 |
aaaagagaaaataaaaacagtttcacatcaaaga-tcaatccatgcaaaaactgaagaa |
35800394 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #7
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 17 - 136
Target Start/End: Original strand, 35766508 - 35766627
Alignment:
| Q |
17 |
cagaatcgtcccagtttatcacattgggatgcagacacatatatttcttgacttctattatctttcgccatggtactgagccaatcgaagcacaaaactt |
116 |
Q |
| |
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|||| ||||||||||| ||||| | ||||||||| ||||| | ||||| ||||||||| ||| ||| | |||||||||| || |||||||||||| |
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| T |
35766508 |
cagagtcgtcccagttgatcactgttggatgcagaaacataaacctcttgccttctattaccttcttccacgaaactgagccaaccgtagcacaaaactt |
35766607 |
T |
|
| Q |
117 |
cttttcccacaaaggcactg |
136 |
Q |
| |
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||| |||||| ||||||||| |
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| T |
35766608 |
cttctcccaccaaggcactg |
35766627 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 187 - 264
Target Start/End: Original strand, 35799826 - 35799897
Alignment:
| Q |
187 |
atctacttgaacatagccaaaatcaagacattataagatcatcaaaatataacaccataatcaaaacagtttcatgta |
264 |
Q |
| |
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|||| ||||||||| ||||||||||||||||| | ||||| ||||||| |||||||||||||||| |||||||| |
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| T |
35799826 |
atctccttgaacatggccaaaatcaagacattttcagatc----aaatata--accataatcaaaacagattcatgta |
35799897 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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