View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18105_low_7 (Length: 420)

Name: NF18105_low_7
Description: NF18105
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18105_low_7
NF18105_low_7
[»] chr4 (13 HSPs)
chr4 (13-401)||(16651386-16651774)
chr4 (20-232)||(24839640-24839854)
chr4 (20-232)||(24843098-24843312)
chr4 (20-401)||(24773355-24773738)
chr4 (20-232)||(24759320-24759535)
chr4 (20-268)||(12331070-12331319)
chr4 (178-268)||(12413223-12413313)
chr4 (67-171)||(24771487-24771591)
chr4 (21-117)||(24956981-24957078)
chr4 (20-115)||(12419408-12419504)
chr4 (36-115)||(12413364-12413444)
chr4 (295-376)||(24759544-24759621)
chr4 (20-115)||(12382768-12382864)
[»] scaffold1886 (1 HSPs)
scaffold1886 (20-232)||(605-819)
[»] chr6 (3 HSPs)
chr6 (47-268)||(13785523-13785745)
chr6 (47-268)||(13792879-13793101)
chr6 (47-268)||(13807109-13807331)


Alignment Details
Target: chr4 (Bit Score: 357; Significance: 0; HSPs: 13)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 357; E-Value: 0
Query Start/End: Original strand, 13 - 401
Target Start/End: Original strand, 16651386 - 16651774
Alignment:
Q  13 aatattgtaaaattcaaagccccataaagggtactcattttaaacaggactaaaactctataaatatcataataatgggatggaagtaagtaaaacacac 112  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  16651386 aatattgtaaaattcaaagccccataaagggtactcattttaaacaggactaaaactctataaatatcataataatgggatggaagtaagtaaaacacac 16651485  T
Q  113 aaataaacattatttatcctcgactcaatcatatcatacatcctcattaaagtttctttcatattattcctatctatttgatgcatgctaaactaaatcc 212  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  16651486 aaataaacattatttatcctcgactcaatcatatcatacatcctcattaaagtttctttcatattattcctatctatttgatgcatgctaaactaaatcc 16651585  T
Q  213 taacaatgaaacagataaataatgattccaaaaatgctcttgctaacaatgtgaaaacaacattcttctagtttctaaattttataagtttattaaagtc 312  Q
    |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||   ||||||||| ||||||||||||||||||| ||||||||||    
T  16651586 taacaatgaaactgataaataatgattccaaaaatgctcttgctaacaatgtgaaaatggcattcttctggtttctaaattttataagtctattaaagtc 16651685  T
Q  313 catattttgggcaaaaatagaccactatatatagtgtcatccagccatgttcaaaataatgatagtatgttttttaaaaatatgggacc 401  Q
    ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||    
T  16651686 catattttgggcaaaaatagaccactatatatagtgtcatctagccatgttcaaaataatgatagtatattttttaaaaatatgggacc 16651774  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 20 - 232
Target Start/End: Original strand, 24839640 - 24839854
Alignment:
Q  20 taaaattcaaagccccataaagggtactcattttaaacagg-actaaaactctataaatatcataataatgggatggaagtaagtaaaacacacaaataa 118  Q
    |||||||||||||| ||||||||  | |||||||||| ||| ||||| | |||| ||| |||| ||||||||||| ||||||||||||||||||||||||    
T  24839640 taaaattcaaagcctcataaaggagaatcattttaaatagggactaagagtctagaaacatcagaataatgggatagaagtaagtaaaacacacaaataa 24839739  T
Q  119 ac-attatttatcctcgactcaatcatatcatacatcctcattaaagtttctttcatattattcctatctatttgatgcatgctaaactaaatcctaaca 217  Q
    || |   || ||||| |||||||||||||||||||||||   ||||||| |||||| || ||||||| |||||| ||||||||||||||||||||| | |    
T  24839740 accaccgttcatccttgactcaatcatatcatacatccttcgtaaagttcctttcaaatcattcctagctattttatgcatgctaaactaaatcctgata 24839839  T
Q  218 atgaaacagataaat 232  Q
     |||||| |||||||    
T  24839840 ttgaaactgataaat 24839854  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 20 - 232
Target Start/End: Original strand, 24843098 - 24843312
Alignment:
Q  20 taaaattcaaagccccataaagggtactcattttaaacagg-actaaaactctataaatatcataataatgggatggaagtaagtaaaacacacaaataa 118  Q
    |||||||||||||| ||||||||  | |||||||||| ||| ||||| | |||| ||| |||| ||||||||||| ||||||||||||||||||||||||    
T  24843098 taaaattcaaagcctcataaaggagaatcattttaaatagggactaagagtctagaaacatcagaataatgggatagaagtaagtaaaacacacaaataa 24843197  T
Q  119 ac-attatttatcctcgactcaatcatatcatacatcctcattaaagtttctttcatattattcctatctatttgatgcatgctaaactaaatcctaaca 217  Q
    || |   || ||||| |||||||||||||||||||||||   ||||||| |||||| || ||||||| |||||| ||||||||||||||||||||| | |    
T  24843198 accaccgttcatccttgactcaatcatatcatacatccttcgtaaagttcctttcaaatcattcctagctattttatgcatgctaaactaaatcctgata 24843297  T
Q  218 atgaaacagataaat 232  Q
     |||||| |||||||    
T  24843298 ttgaaactgataaat 24843312  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 20 - 401
Target Start/End: Original strand, 24773355 - 24773738
Alignment:
Q  20 taaaattcaaagccccataaagggtactcattttaaacagg-actaaaactctataaatatcataataatgggatggaagtaagtaaaacacacaaataa 118  Q
    |||||||||||| |||||||||| || ||||||||||  || ||||| |||||| ||| |||||||||||  || |||||||||||||||||||||||||    
T  24773355 taaaattcaaagtcccataaaggataatcattttaaattgggactaagactctagaaacatcataataataagacggaagtaagtaaaacacacaaataa 24773454  T
Q  119 ac-attatttatcctcgactcaatcatatcatacatcctcattaaagtttctttcatattattcctatctatttgatgcatgctaaactaaatcctaaca 217  Q
    || | |||| ||| | ||||||||||||||||||||| | | ||| ||| |||||| || ||||||| ||||| ||||||||||||| ||||| ||  ||    
T  24773455 accactattcatctt-gactcaatcatatcatacatcataaataaggttcctttcagatcattcctagctattcgatgcatgctaaattaaattctggca 24773553  T
Q  218 atgaaacagataaataatgattccaaaaatgctcttgctaacaatgtgaaaacaac---attcttc---tagtttctaaattttataagtttattaaagt 311  Q
    ||||||| ||||| |  ||||  |||||| ||||||||| ||| ||||||| |  |    ||||||   ||| || |||||||||||||| ||||| |||    
T  24773554 atgaaactgataattcttgatgtcaaaaaggctcttgcttacactgtgaaagcggcgtgtttcttctcgtaggttataaattttataagtctattagagt 24773653  T
Q  312 ccatattttgggcaaaaatagaccactatatatagtgtcatccagccatgttcaaaataatgatagtatgttttttaaaaatatgggacc 401  Q
    | ||| | ||||| | |||| ||||     |||||||| ||| |||||||||||||||||||||| |||  ||| | |||||||||||||    
T  24773654 ctataatctgggccagaatatacca----ttatagtgttatctagccatgttcaaaataatgataatatcctttct-aaaatatgggacc 24773738  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 20 - 232
Target Start/End: Original strand, 24759320 - 24759535
Alignment:
Q  20 taaaattcaaagccccataaagggt-actcattttaaacagg-actaaaactctataaatatcataataatgggatggaagtaagtaaaacacacaaata 117  Q
    |||||||||||||| |||||| ||  | ||||| |||||||| ||||||| |||||||| |||||||||||  ||||||||||||| |||||| ||||||    
T  24759320 taaaattcaaagcctcataaaaggagaatcattgtaaacagggactaaaagtctataaacatcataataataagatggaagtaagtgaaacacgcaaata 24759419  T
Q  118 aac-attatttatcctcgactcaatcatatcatacatcctcattaaagtttctttcatattattcctatctatttgatgcatgctaaactaaatcctaac 216  Q
    ||| | | || || |||||||||| ||||| ||||||||| ||||||||| |||||| || ||||||| | || ||||||| ||||||||||||  | ||    
T  24759420 aaccacttttcattctcgactcaaacatattatacatccttattaaagttcctttcaaatcattcctagcaatatgatgcacgctaaactaaattatgac 24759519  T
Q  217 aatgaaacagataaat 232  Q
    | |||||| |||||||    
T  24759520 attgaaactgataaat 24759535  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 20 - 268
Target Start/End: Original strand, 12331070 - 12331319
Alignment:
Q  20 taaaattcaaagccccataaagggtactcattttaaaca--ggactaaaactctataaatatcataataatgggatggaagtaagtaaaacacacaaata 117  Q
    |||||| ||||||||  ||||||| | |||||||||| |  |||| || |||||| |||  ||| ||||||||||||||||||| || |||||| |||||    
T  12331070 taaaatccaaagccc--taaaggggaatcattttaaatatgggaccaagactctagaaaagtcaaaataatgggatggaagtaattacaacacaaaaata 12331167  T
Q  118 aacatt-atttatcctcgactcaatcatatcatacatcctcattaaagtttctttcatattattcctatctatttgatgcatgctaaactaaatcctaac 216  Q
    ||||   |   || || ||| ||||||||| ||||||| |||||||||||  ||||| || |||||||| ||||||||  |||||||||||| |  | ||    
T  12331168 aacaaccacagattctggacacaatcatattatacatcatcattaaagttcatttcagatcattcctatgtatttgataaatgctaaactaattgttcac 12331267  T
Q  217 aatgaaacagataaataatgattccaaaaatgctcttgctaacaatgtgaaa 268  Q
    ||| |||| | ||||| ||||| ||| ||||||||||  |||||||||||||    
T  12331268 aatcaaactggtaaattatgatgccacaaatgctctttataacaatgtgaaa 12331319  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 178 - 268
Target Start/End: Complemental strand, 12413313 - 12413223
Alignment:
Q  178 attcctatctatttgatgcatgctaaactaaatcctaacaatgaaacagataaataatgattccaaaaatgctcttgctaacaatgtgaaa 268  Q
    |||||||| ||||| |||||||| ||||||| |  | ||||| |||||| ||||| |||||  |||||||||||| |||||||||||||||    
T  12413313 attcctatttatttcatgcatgccaaactaagtgttgacaattaaacaggtaaattatgatgacaaaaatgctctcgctaacaatgtgaaa 12413223  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 67 - 171
Target Start/End: Original strand, 24771487 - 24771591
Alignment:
Q  67 actctataaatatcataataatgggatggaagtaagtaaaacacacaaata-aacattatttatcctcgactcaatcatatcatacatcctcattaaagt 165  Q
    |||||| ||| |||| ||||||| ||||||||||| | ||||||||||||| | ||| ||| || |||||||||||||||| ||||||||| | ||||||    
T  24771487 actctaaaaacatcaaaataatgagatggaagtaaattaaacacacaaatataccatcattcat-ctcgactcaatcatatgatacatcctaagtaaagt 24771585  T
Q  166 ttcttt 171  Q
    | ||||    
T  24771586 tccttt 24771591  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 21 - 117
Target Start/End: Original strand, 24956981 - 24957078
Alignment:
Q  21 aaaattcaaagccccataaagggtactcattttaaacagg-actaaaactctataaatatcataataatgggatggaagtaagtaaaacacacaaata 117  Q
    ||||||||||| ||||||||||  | |||||||||| ||| || || |||||| ||| ||| |||||||| ||| ||||||||||||| |||||||||    
T  24956981 aaaattcaaagtcccataaaggagaatcattttaaatagggaccaagactctagaaacatcgtaataatgagattgaagtaagtaaaatacacaaata 24957078  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 20 - 115
Target Start/End: Original strand, 12419408 - 12419504
Alignment:
Q  20 taaaattcaaagccccataaagggtactcattttaaaca-ggactaaaactctataaatatcataataatgggatggaagtaagtaaaacacacaaa 115  Q
    |||||| ||||| || |||||||| | |||||||||||| ||||||| || ||| ||| |||| ||||||||||||||| |||||| || |||||||    
T  12419408 taaaatccaaagtcctataaaggggaatcattttaaacatggactaagacactagaaacatcacaataatgggatggaaataagtacaatacacaaa 12419504  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 36 - 115
Target Start/End: Complemental strand, 12413444 - 12413364
Alignment:
Q  36 ataaagggtactcattttaaacagg-actaaaactctataaatatcataataatgggatggaagtaagtaaaacacacaaa 115  Q
    |||||||| | |||||||||| ||| || || |||||| ||| |||| ||||||||||||||| |||||| ||||||||||    
T  12413444 ataaaggggaatcattttaaataggtacaaagactctagaaacatcaaaataatgggatggaaataagtacaacacacaaa 12413364  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 295 - 376
Target Start/End: Original strand, 24759544 - 24759621
Alignment:
Q  295 tataagtttattaaagtccatattttgggcaaaaatagaccactatatatagtgtcatccagccatgttcaaaataatgata 376  Q
    ||||||| ||||| | |||||| ||||||| | ||||||||||||||    ||||||||  |||||||||||||||||||||    
T  24759544 tataagtctattagaatccataatttgggctagaatagaccactata----gtgtcatcttgccatgttcaaaataatgata 24759621  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 20 - 115
Target Start/End: Original strand, 12382768 - 12382864
Alignment:
Q  20 taaaattcaaagccccataaagggtactcattttaaacagg-actaaaactctataaatatcataataatgggatggaagtaagtaaaacacacaaa 115  Q
    |||||| |||| ||| |||||||| | || ||||||| ||| ||||| ||||||  || |||| ||||||||||||||| ||| || ||||||||||    
T  12382768 taaaatccaaatccctataaaggggaatcgttttaaatagggactaagactctagcaacatcaaaataatgggatggaaataaatacaacacacaaa 12382864  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1886 (Bit Score: 83; Significance: 3e-39; HSPs: 1)
Name: scaffold1886
Description:

Target: scaffold1886; HSP #1
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 20 - 232
Target Start/End: Original strand, 605 - 819
Alignment:
Q  20 taaaattcaaagccccataaagggtactcattttaaacagg-actaaaactctataaatatcataataatgggatggaagtaagtaaaacacacaaataa 118  Q
    |||||||||||||  ||||||||  | |||||||||| ||| ||||| | |||| |||||||| ||||||||||| ||||||||||||||||||||||||    
T  605 taaaattcaaagcttcataaaggaaaatcattttaaaaagggactaagagtctagaaatatcagaataatgggatagaagtaagtaaaacacacaaataa 704  T
Q  119 ac-attatttatcctcgactcaatcatatcatacatcctcattaaagtttctttcatattattcctatctatttgatgcatgctaaactaaatcctaaca 217  Q
    || |   || ||||| ||||||||||||||||||||| |   ||||||  |||||| || |||||||  ||||| |||||||||||||||||||||||||    
T  705 accaccgttcatccttgactcaatcatatcatacatcttttgtaaagtacctttcaaatcattcctagttattttatgcatgctaaactaaatcctaaca 804  T
Q  218 atgaaacagataaat 232  Q
     |||||| |||||||    
T  805 ttgaaactgataaat 819  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 47 - 268
Target Start/End: Complemental strand, 13785745 - 13785523
Alignment:
Q  47 tcattttaaacagga-ctaaaactctataaatatcataataatgggatggaagtaagtaaaacacacaaataa-acattatttatcctcgactcaatcat 144  Q
    |||||||||| |||| |||| |||||| ||| |||| |||||||||||||||  ||||| | |||||||| |  |||  ||  |||||||||||||||||    
T  13785745 tcattttaaataggaactaagactctagaaa-atcaaaataatgggatggaaaaaagtacaccacacaaaaagtacagcatacatcctcgactcaatcat 13785647  T
Q  145 atcatacatcctcattaaagtttctttcatattattcctatctatttgatgcatgctaaactaaatcctaacaatgaaacagataaataatgattccaaa 244  Q
    || ||||||| || ||||| ||  ||||| || |||| ||| ||||||||||||   |||||||    | ||||| |||| | ||||| ||||| ||| |    
T  13785646 attatacatcatcgttaaatttcatttcagatcattcatatgtatttgatgcatatcaaactaagcgttgacaattaaactggtaaattatgatgccaca 13785547  T
Q  245 aatgctcttgctaacaatgtgaaa 268  Q
    |||| ||| |||||||||||||||    
T  13785546 aatggtctcgctaacaatgtgaaa 13785523  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 47 - 268
Target Start/End: Complemental strand, 13793101 - 13792879
Alignment:
Q  47 tcattttaaacagga-ctaaaactctataaatatcataataatgggatggaagtaagtaaaacacacaaataa-acattatttatcctcgactcaatcat 144  Q
    |||||||||| |||| |||| |||||| ||| |||| |||||||||||||||  ||||| | |||||||| |  |||  ||  |||||||||||||||||    
T  13793101 tcattttaaataggaactaagactctagaaa-atcaaaataatgggatggaaaaaagtacaccacacaaaaagtacagcatacatcctcgactcaatcat 13793003  T
Q  145 atcatacatcctcattaaagtttctttcatattattcctatctatttgatgcatgctaaactaaatcctaacaatgaaacagataaataatgattccaaa 244  Q
    || ||||||| || ||||| ||  ||||| || |||| ||| ||||||||||||   |||||||    | ||||| |||| | ||||| ||||| ||| |    
T  13793002 attatacatcatcgttaaatttcatttcagatcattcatatgtatttgatgcatatcaaactaagcgttgacaattaaactggtaaattatgatgccaca 13792903  T
Q  245 aatgctcttgctaacaatgtgaaa 268  Q
    |||| ||| |||||||||||||||    
T  13792902 aatggtctcgctaacaatgtgaaa 13792879  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 47 - 268
Target Start/End: Complemental strand, 13807331 - 13807109
Alignment:
Q  47 tcattttaaacagga-ctaaaactctataaatatcataataatgggatggaagtaagtaaaacacacaaataa-acattatttatcctcgactcaatcat 144  Q
    |||||||||| |||| |||| |||||| ||| |||| |||||||||||||||  ||||| | |||||||| |  |||  ||  |||||||||||||||||    
T  13807331 tcattttaaataggaactaagactctagaaa-atcaaaataatgggatggaaaaaagtacaccacacaaaaagtacagcatacatcctcgactcaatcat 13807233  T
Q  145 atcatacatcctcattaaagtttctttcatattattcctatctatttgatgcatgctaaactaaatcctaacaatgaaacagataaataatgattccaaa 244  Q
    || ||||||| || ||||| ||  ||||| || |||| ||| ||||||||||||   |||||||    | ||||| |||| | ||||| ||||| ||| |    
T  13807232 attatacatcatcgttaaatttcatttcagatcattcatatgtatttgatgcatatcaaactaagcgttgacaattaaactggtaaattatgatgccaca 13807133  T
Q  245 aatgctcttgctaacaatgtgaaa 268  Q
    |||| ||| |||||||||||||||    
T  13807132 aatggtctcgctaacaatgtgaaa 13807109  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University