View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18105_low_8 (Length: 410)

Name: NF18105_low_8
Description: NF18105
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18105_low_8
NF18105_low_8
[»] chr7 (4 HSPs)
chr7 (14-393)||(19910157-19910537)
chr7 (208-253)||(6037062-6037107)
chr7 (204-252)||(47236173-47236221)
chr7 (60-116)||(6036865-6036921)
[»] chr8 (6 HSPs)
chr8 (17-194)||(33828267-33828446)
chr8 (15-240)||(16366660-16366892)
chr8 (105-252)||(36734666-36734813)
chr8 (106-243)||(26534529-26534665)
chr8 (29-123)||(42664141-42664238)
chr8 (15-55)||(26534436-26534476)
[»] scaffold0005 (1 HSPs)
scaffold0005 (14-252)||(270295-270533)
[»] chr5 (3 HSPs)
chr5 (17-188)||(14144810-14144987)
chr5 (14-243)||(15470948-15471178)
chr5 (15-121)||(35951919-35952028)
[»] chr2 (10 HSPs)
chr2 (14-252)||(29685999-29686239)
chr2 (15-124)||(18061115-18061227)
chr2 (60-129)||(21017204-21017273)
chr2 (30-123)||(19865946-19866039)
chr2 (30-123)||(19870847-19870940)
chr2 (30-123)||(19875748-19875841)
chr2 (28-123)||(33226620-33226718)
chr2 (35-122)||(45040067-45040157)
chr2 (204-243)||(43559937-43559976)
chr2 (15-122)||(43559685-43559795)
[»] chr1 (4 HSPs)
chr1 (14-243)||(31066954-31067185)
chr1 (30-118)||(44508214-44508305)
chr1 (204-243)||(15962583-15962622)
chr1 (204-252)||(7093804-7093852)
[»] chr3 (6 HSPs)
chr3 (17-124)||(46091797-46091907)
chr3 (15-123)||(28521516-28521627)
chr3 (20-121)||(33087858-33087961)
chr3 (15-129)||(28050714-28050831)
chr3 (15-129)||(28146771-28146890)
chr3 (91-123)||(45483757-45483789)
[»] chr4 (9 HSPs)
chr4 (14-122)||(29857392-29857503)
chr4 (65-123)||(20447756-20447814)
chr4 (30-123)||(55250518-55250614)
chr4 (204-252)||(29857274-29857322)
chr4 (35-129)||(1101069-1101166)
chr4 (60-110)||(46964062-46964112)
chr4 (204-242)||(47668748-47668786)
chr4 (204-240)||(20447611-20447647)
chr4 (30-113)||(47668906-47668992)
[»] chr6 (1 HSPs)
chr6 (15-113)||(4017104-4017205)


Alignment Details
Target: chr7 (Bit Score: 322; Significance: 0; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 322; E-Value: 0
Query Start/End: Original strand, 14 - 393
Target Start/End: Original strand, 19910157 - 19910537
Alignment:
Q  14 cagagatgatattataaaaatattgataatctattttgtttagtgtttatggataaatttgacttctaaaaacaccttagagcacaacttttataaataa 113  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  19910157 cagagatgatattataaaaatattgataatctattttgtttagtgtttatggataaatttgacttctaaaaacaccttagagcacaacttttataaataa 19910256  T
Q  114 ctattgttagcgtttannnnnnnngttgcagtttcattaattatgagtaaaattaattaagtttcgtatattagtgtttaannnnnnnnn-cttctttat 212  Q
    ||||||||||||||||        |||||||||||||||||||||||||||||||||||||||||||||||||||||||||          |||||||||    
T  19910257 ctattgttagcgtttattttttttgttgcagtttcattaattatgagtaaaattaattaagtttcgtatattagtgtttaatttttttcttcttctttat 19910356  T
Q  213 atttggccccctcgtaaaaatagtgctagctacgtcgctgtgcataagaacactttctcatatctgacagagtgttttaatgtgtaatatgcaggtaaaa 312  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  19910357 atttggccccctcgtaaaaatagtgctagctacgtcgctgtgcataagaacactttctcatatctgacagagtgttttaatgtgtaatatgcaggtaaaa 19910456  T
Q  313 aatgaaacatgggctttgtggacttggtatcgcaatcaggactcttacaaggaagttggagatcaaatttacatagttaga 393  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  19910457 aatgaaacatgggctttgtggacttggtatcgcaatcaggactcttacaaggaagttggagatcaaatttacatagttaga 19910537  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 208 - 253
Target Start/End: Original strand, 6037062 - 6037107
Alignment:
Q  208 tttatatttggccccctcgtaaaaatagtgctagctacgtcgctgt 253  Q
    ||||||||||||| |||||||||||| ||||||||| |||||||||    
T  6037062 tttatatttggcctcctcgtaaaaattgtgctagcttcgtcgctgt 6037107  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 204 - 252
Target Start/End: Original strand, 47236173 - 47236221
Alignment:
Q  204 cttctttatatttggccccctcgtaaaaatagtgctagctacgtcgctg 252  Q
    ||||||||||||||||||||||||||||||  |||||||| || |||||    
T  47236173 cttctttatatttggccccctcgtaaaaattatgctagcttcgccgctg 47236221  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 60 - 116
Target Start/End: Original strand, 6036865 - 6036921
Alignment:
Q  60 ttatggataaatttgacttctaaaaacaccttagagcacaacttttataaataacta 116  Q
    |||||||||||||| |||||| ||||| |  |||||  |||||||||||||||||||    
T  6036865 ttatggataaattttacttcttaaaactcaatagagttcaacttttataaataacta 6036921  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 111; Significance: 7e-56; HSPs: 6)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 111; E-Value: 7e-56
Query Start/End: Original strand, 17 - 194
Target Start/End: Original strand, 33828267 - 33828446
Alignment:
Q  17 agatgatattataaaaatattgataatctattttgtttagtgt---ttatggataaatttgacttctaaaaacaccttagagcacaacttttataaataa 113  Q
    ||||||||||||||||||||||||||||||||| |||||||||   ||||||||||||||||||||||||||| ||||||||| ||||||||||||||||    
T  33828267 agatgatattataaaaatattgataatctatttagtttagtgtcaattatggataaatttgacttctaaaaactccttagagctcaacttttataaataa 33828366  T
Q  114 ctattgttagcgtttannnnnnnngttgcagtttcattaattatgagtaaaattaattaagtttcgtatattagtgtttaa 194  Q
    ||||||||||| ||||        |||||||||||||||| ||||||| |||||||||||||||| |||||||||||||||    
T  33828367 ctattgttagcttttattttctttgttgcagtttcattaaatatgagt-aaattaattaagtttcatatattagtgtttaa 33828446  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 15 - 240
Target Start/End: Complemental strand, 16366892 - 16366660
Alignment:
Q  15 agagatgatattataaaaatattgataatctattttgtttagtgt---ttatggataaatttgacttctaaaaacaccttagagcacaacttttataaat 111  Q
    ||||||||||||||||||||||||||||||||||| |||||||||   |||| ||||||||||| || |||||||  ||||| || ||||||||||||||    
T  16366892 agagatgatattataaaaatattgataatctatttagtttagtgttaattatagataaatttgaattttaaaaacttcttagggctcaacttttataaat 16366793  T
Q  112 aactattgttagcgttta----nnnnnnnngttgcagtttcattaattatgagtaaaattaattaagtttcgtatattagtgtttaannnnnnnnncttc 207  Q
    ||||||||||| | ||||            ||||||||||| |||| |||||||||||||||||||||||| ||||||| |||||||         ||||    
T  16366792 aactattgttatcttttattttatttttttgttgcagtttcgttaaatatgagtaaaattaattaagtttcatatattaatgtttaattttttcttcttc 16366693  T
Q  208 tttatatttggccccctcgtaaaaatagtgcta 240  Q
    |||||||||| ||||||| ||||||||||||||    
T  16366692 tttatatttgaccccctcataaaaatagtgcta 16366660  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 105 - 252
Target Start/End: Original strand, 36734666 - 36734813
Alignment:
Q  105 tataaataactattgttagcgtttannnnnnnngttgcagtttcattaattatgagtaaaattaattaagtttcgtatattagtgtttaannnnnnnnnc 204  Q
    ||||||||||||| |||||| ||||        |||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||         |    
T  36734666 tataaataactatcgttagcttttattttctttgttgcagtttcattaaatattagtaaaattaattaagtttcgtatattagtgtttaatttgtttttc 36734765  T
Q  205 ttctttatatttggccccctcgtaaaaatagtgctagctacgtcgctg 252  Q
    |||||||||||| |||| ||||||||||||||||||||| || |||||    
T  36734766 ttctttatatttagccctctcgtaaaaatagtgctagcttcgccgctg 36734813  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 106 - 243
Target Start/End: Original strand, 26534529 - 26534665
Alignment:
Q  106 ataaataactattgttagcgtttannnnnnnngttgcagtttcattaattatgagtaaaattaattaagtttcgtatattagtgtttaannnnnnnnnct 205  Q
    ||||||||||||||||||| ||||        |||||| ||||||||| |||||||||||||||||| ||||  |||||||||||||||          |    
T  26534529 ataaataactattgttagcttttattttctttgttgcaatttcattaaatatgagtaaaattaattaggttttatatattagtgtttaatttattctt-t 26534627  T
Q  206 tctttatatttggccccctcgtaaaaatagtgctagct 243  Q
    |||||||||||||||||||| |||||| |||| |||||    
T  26534628 tctttatatttggccccctcataaaaacagtggtagct 26534665  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 29 - 123
Target Start/End: Complemental strand, 42664238 - 42664141
Alignment:
Q  29 aaaaatattgataatctattttgtttagtgt---ttatggataaatttgacttctaaaaacaccttagagcacaacttttataaataactattgttag 123  Q
    ||||||| | ||||||||||| |||||||||   ||||  ||||||||||||| | |||||  | ||||| ||||||||||||||||| |||||||||    
T  42664238 aaaaatacttataatctatttagtttagtgtcaattataaataaatttgactttttaaaacttcatagagtacaacttttataaataattattgttag 42664141  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 15 - 55
Target Start/End: Original strand, 26534436 - 26534476
Alignment:
Q  15 agagatgatattataaaaatattgataatctattttgttta 55  Q
    ||||||| ||||||||||||||||||||||||||| |||||    
T  26534436 agagatggtattataaaaatattgataatctatttagttta 26534476  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0005 (Bit Score: 101; Significance: 6e-50; HSPs: 1)
Name: scaffold0005
Description:

Target: scaffold0005; HSP #1
Raw Score: 101; E-Value: 6e-50
Query Start/End: Original strand, 14 - 252
Target Start/End: Original strand, 270295 - 270533
Alignment:
Q  14 cagagatgatattataaaaatattgataatctattttgtttagtgt---ttatggataaatttgacttctaaaaacaccttagagcacaacttttataaa 110  Q
    ||||||||||||||||||||||||||||||||| || |||||||||   ||||  ||||||||||||| ||||||| ||||||||| |||||||||||||    
T  270295 cagagatgatattataaaaatattgataatctacttagtttagtgtcaattataaataaatttgacttttaaaaactccttagagctcaacttttataaa 270394  T
Q  111 taactattgttagcgtttannnnnnnngttgcagtttcattaattatgagtaaaattaattaagtttcgtatattagtgtttaannnnnnnnncttcttt 210  Q
    |||||||| ||||| ||||        ||||||||||||||||  ||||||||||||||||| |||||||||||||  ||||||         |||||||    
T  270395 taactatttttagcttttattttctttgttgcagtttcattaa--atgagtaaaattaattaggtttcgtatattaacgtttaa-tttttcttcttcttt 270491  T
Q  211 atatttggccccctcgtaaaaatagtgctagctacgtcgctg 252  Q
    ||||||||||||||||||||||||||| ||||| || |||||    
T  270492 atatttggccccctcgtaaaaatagtgttagcttcgccgctg 270533  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 95; Significance: 2e-46; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 17 - 188
Target Start/End: Complemental strand, 14144987 - 14144810
Alignment:
Q  17 agatgatattataaaaatattgataatctattttgtttagtgt------ttatggataaatttgacttctaaaaacaccttagagcacaacttttataaa 110  Q
    ||||||||||||||||||||||||||||||||| |||||||||      ||||||||||||||||| ||||||||| |||||||||  ||||||||||||    
T  14144987 agatgatattataaaaatattgataatctatttagtttagtgtcaataattatggataaatttgacctctaaaaactccttagagcttaacttttataaa 14144888  T
Q  111 taactattgttagcgtttannnnnnnngttgcagtttcattaattatgagtaaaattaattaagtttcgtatattagt 188  Q
    ||| |||||||||| ||||        |||||||||||||||| |||||||||||||||||||||||| |||||||||    
T  14144887 taagtattgttagcttttattttctttgttgcagtttcattaaatatgagtaaaattaattaagtttcatatattagt 14144810  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 14 - 243
Target Start/End: Complemental strand, 15471178 - 15470948
Alignment:
Q  14 cagagatgatattataaaaatattgataatctattttgtttagtgt---ttatggataaatttgacttctaaaaacaccttagagcacaacttttataaa 110  Q
    ||||||||||| || ||||||||||||||||||||| |||||||||   |||||||||||||||| |||||||||| | ||||||| |||||||||||||    
T  15471178 cagagatgataatacaaaaatattgataatctatttagtttagtgtcaattatggataaatttgaattctaaaaactcattagagctcaacttttataaa 15471079  T
Q  111 taactattgttagcgtttannnnnnnngttgcagtttcattaattatgagtaaaattaattaagtttcgtatattagtgtttaannnnnnnnncttcttt 210  Q
    |||||| ||||| | |||         |||| ||||||||||| ||||||||||||||||||| |||||||||||| | |||||         |||||||    
T  15471078 taactaatgttaacttttcttttctttgttgtagtttcattaaatatgagtaaaattaattaaatttcgtatattaatttttaa--ttttcttcttcttt 15470981  T
Q  211 atatttggccccctcgtaaaaatagtgctagct 243  Q
    |||||||||  |||||||||| |||||||||||    
T  15470980 atatttggcatcctcgtaaaattagtgctagct 15470948  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 15 - 121
Target Start/End: Complemental strand, 35952028 - 35951919
Alignment:
Q  15 agagatgatattataaaaatattgataatctattttgtttagtgt---ttatggataaatttgacttctaaaaacaccttagagcacaacttttataaat 111  Q
    ||||||||||||  | ||||||||||||| ||||| |||||||||   |||||||||||||| | |||| | ||| |  || ||| ||||||||||||||    
T  35952028 agagatgatattgaacaaatattgataatatatttagtttagtgtcaattatggataaattttagttcttacaactctataaagctcaacttttataaat 35951929  T
Q  112 aactattgtt 121  Q
    ||||||||||    
T  35951928 aactattgtt 35951919  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 89; Significance: 9e-43; HSPs: 10)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 89; E-Value: 9e-43
Query Start/End: Original strand, 14 - 252
Target Start/End: Complemental strand, 29686239 - 29685999
Alignment:
Q  14 cagagatgatattataaaaatattgataatctattttgtttagtgt---ttatggataaatttgacttctaaaaacaccttagagcacaacttttataaa 110  Q
    ||||||||||| ||||||||||||||||||||||||  ||||||||   ||||||||||| ||||||||||||||| | ||| ||  ||||||||||||     
T  29686239 cagagatgatactataaaaatattgataatctatttattttagtgtcaattatggataaaattgacttctaaaaactctttaaaggtcaacttttataag 29686140  T
Q  111 taactattgttagcgtttannnnnnnngttgcagtttcattaattatgagtaaaattaattaagtttcgtatattagtgtttaannnnnnnnncttcttt 210  Q
    |||||||||||| | ||||        |||| |||||||| || |||||||||||||||||||||||||||||||| |||||||         |||||||    
T  29686139 taactattgttaac-tttattttctttgttgaagtttcatcaaatatgagtaaaattaattaagtttcgtatattaatgtttaattttttcttcttcttt 29686041  T
Q  211 atatttggccccctcgtaaaaatagtgctagctacgtcgctg 252  Q
    |||||||  || ||||||||||||||||||||| || |||||    
T  29686040 atatttgatccgctcgtaaaaatagtgctagcttcgccgctg 29685999  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 15 - 124
Target Start/End: Complemental strand, 18061227 - 18061115
Alignment:
Q  15 agagatgatattataaaaatattgataatctattttgtttagtgt---ttatggataaatttgacttctaaaaacaccttagagcacaacttttataaat 111  Q
    ||||||| ||||| || |||||| ||||||||||| |||||||||   ||||| ||||||||||||||| ||||| |  || ||| ||| ||||||||||    
T  18061227 agagatgctattaaaataatattaataatctatttagtttagtgtccattatgaataaatttgacttcttaaaactctatatagctcaaattttataaat 18061128  T
Q  112 aactattgttagc 124  Q
    |||||||||||||    
T  18061127 aactattgttagc 18061115  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 60 - 129
Target Start/End: Complemental strand, 21017273 - 21017204
Alignment:
Q  60 ttatggataaatttgacttctaaaaacaccttagagcacaacttttataaataactattgttagcgttta 129  Q
    ||||| ||||||||||||||| ||||| || || | | ||||||||||||||||||||||||||| ||||    
T  21017273 ttatgcataaatttgacttcttaaaactccatatatctcaacttttataaataactattgttagctttta 21017204  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 30 - 123
Target Start/End: Original strand, 19865946 - 19866039
Alignment:
Q  30 aaaatattgataatctattttgtttagtgt---ttatggataaatttgacttctaaaaacaccttagagcacaacttttataaataactattgttag 123  Q
    ||||||| |||||||||||| ||||||| |   |||| ||||||||||||||   |||||  | ||||||||||||||||||||||| |||||||||    
T  19865946 aaaatatagataatctatttagtttagtatcaattatagataaatttgactt---aaaacttcatagagcacaacttttataaataattattgttag 19866039  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 30 - 123
Target Start/End: Original strand, 19870847 - 19870940
Alignment:
Q  30 aaaatattgataatctattttgtttagtgt---ttatggataaatttgacttctaaaaacaccttagagcacaacttttataaataactattgttag 123  Q
    ||||||| |||||||||||| ||||||| |   |||| ||||||||||||||   |||||  | ||||||||||||||||||||||| |||||||||    
T  19870847 aaaatatagataatctatttagtttagtatcaattatagataaatttgactt---aaaacttcatagagcacaacttttataaataattattgttag 19870940  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 30 - 123
Target Start/End: Original strand, 19875748 - 19875841
Alignment:
Q  30 aaaatattgataatctattttgtttagtgt---ttatggataaatttgacttctaaaaacaccttagagcacaacttttataaataactattgttag 123  Q
    ||||||| |||||||||||| ||||||| |   |||| ||||||||||||||   |||||  | ||||||||||||||||||||||| |||||||||    
T  19875748 aaaatatagataatctatttagtttagtatcaattatagataaatttgactt---aaaacttcatagagcacaacttttataaataattattgttag 19875841  T

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Target: chr2; HSP #7
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 28 - 123
Target Start/End: Complemental strand, 33226718 - 33226620
Alignment:
Q  28 taaaaatattgataatctattttgtttagtgt---ttatggataaatttgacttctaaaaacaccttagagcacaacttttataaataactattgttag 123  Q
    |||||||| | ||||||||||| |||||||||   ||||  ||||||||||||| | |||||  | ||||| ||||||||||||||||| |||||||||    
T  33226718 taaaaatacttataatctatttagtttagtgtcaattataaataaatttgacttgttaaaacttcatagagtacaacttttataaataattattgttag 33226620  T

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Target: chr2; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 35 - 122
Target Start/End: Complemental strand, 45040157 - 45040067
Alignment:
Q  35 attgataatctattttgtttagtgt---ttatggataaatttgacttctaaaaacaccttagagcacaacttttataaataactattgtta 122  Q
    ||||||||||||||| ||||||| |   |||| |||||||||| ||||| ||||| || |||||| ||  ||||| |||||||||||||||    
T  45040157 attgataatctatttagtttagtatcaattatagataaatttgtcttcttaaaactccatagagctcatattttacaaataactattgtta 45040067  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 204 - 243
Target Start/End: Original strand, 43559937 - 43559976
Alignment:
Q  204 cttctttatatttggccccctcgtaaaaatagtgctagct 243  Q
    |||||||||||||||| ||||||||||||| |||||||||    
T  43559937 cttctttatatttggctccctcgtaaaaattgtgctagct 43559976  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 15 - 122
Target Start/End: Original strand, 43559685 - 43559795
Alignment:
Q  15 agagatgatattataaaaatattgataatctattttgtttagtgt---ttatggataaatttgacttctaaaaacaccttagagcacaacttttataaat 111  Q
    |||||| || ||| ||||||| | |||||||| || |||||||||   ||||  ||||||||||||| | |||||  | || || |||||||||||||||    
T  43559685 agagattattttaaaaaaatacttataatctacttagtttagtgtcaattataaataaatttgacttgttaaaacttcataaagtacaacttttataaat 43559784  T
Q  112 aactattgtta 122  Q
    || ||||||||    
T  43559785 aattattgtta 43559795  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 86; Significance: 5e-41; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 86; E-Value: 5e-41
Query Start/End: Original strand, 14 - 243
Target Start/End: Complemental strand, 31067185 - 31066954
Alignment:
Q  14 cagagatgatattataaaaatattgataatctattttgtttagtgt---ttatggataaatttgacttctaaaaacaccttagagcacaacttttataaa 110  Q
    ||||||| |||||||||||| |||||||||| ||||  ||||||||   |||||||||  |||||||||||||||| ||||||||| ||||||||| |||    
T  31067185 cagagataatattataaaaacattgataatcaatttaatttagtgtcaattatggata--tttgacttctaaaaactccttagagctcaacttttaaaaa 31067088  T
Q  111 taactattgttagcgtttannnnnnnngttgcagtttcattaattatgagtaaaattaattaagtttcgtatattagtgtttaa-nnnnnnnnncttctt 209  Q
    ||| |||||||||  ||||        || ||||||||||||| |||||||||||||||||||||||| |||||||||||||||          ||||||    
T  31067087 taattattgttagtttttattttctttgtcgcagtttcattaaatatgagtaaaattaattaagtttcatatattagtgtttaatttttttcttcttctt 31066988  T
Q  210 tatatttggccccctcgtaaaaatagtgctagct 243  Q
    ||||||||||||||| |||||||||||| |||||    
T  31066987 tatatttggcccccttgtaaaaatagtgttagct 31066954  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 30 - 118
Target Start/End: Complemental strand, 44508305 - 44508214
Alignment:
Q  30 aaaatattgataatctattttgtttagtgt---ttatggataaatttgacttctaaaaacaccttagagcacaacttttataaataactatt 118  Q
    ||||||||||||||||||||  ||||||||   |||| |||||||||||||||| |||||    |||||| |||||||||||||||| ||||    
T  44508305 aaaatattgataatctatttaatttagtgtcaattatagataaatttgacttcttaaaactttatagagctcaacttttataaataattatt 44508214  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 204 - 243
Target Start/End: Original strand, 15962583 - 15962622
Alignment:
Q  204 cttctttatatttggccccctcgtaaaaatagtgctagct 243  Q
    |||||||||||||||||||||||||||||| |||| ||||    
T  15962583 cttctttatatttggccccctcgtaaaaattgtgcgagct 15962622  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 204 - 252
Target Start/End: Original strand, 7093804 - 7093852
Alignment:
Q  204 cttctttatatttggccccctcgtaaaaatagtgctagctacgtcgctg 252  Q
    |||||||||||||| |||||||||||||||  |||||||| || |||||    
T  7093804 cttctttatatttgaccccctcgtaaaaattatgctagcttcgccgctg 7093852  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 69; Significance: 8e-31; HSPs: 6)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 69; E-Value: 8e-31
Query Start/End: Original strand, 17 - 124
Target Start/End: Complemental strand, 46091907 - 46091797
Alignment:
Q  17 agatgatattataaaaatattgataatctattttgtttagtgtt---tatggataaatttgacttctaaaaacaccttagagcacaacttttataaataa 113  Q
    |||| ||||||||||||||||||||||| |||| ||||||||||   ||||||||||||||||||||||| || ||||||||| |||| |||||||||||    
T  46091907 agataatattataaaaatattgataatccatttagtttagtgttaattatggataaatttgacttctaaatactccttagagctcaacatttataaataa 46091808  T
Q  114 ctattgttagc 124  Q
    |||||||||||    
T  46091807 ctattgttagc 46091797  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 15 - 123
Target Start/End: Original strand, 28521516 - 28521627
Alignment:
Q  15 agagatgatattataaaaatattgataatctattttgtttagtgt---ttatggataaatttgacttctaaaaacaccttagagcacaacttttataaat 111  Q
    |||||| ||||||||| |||||||||||||||||| ||||||| |   ||||| ||||||||||||||| ||||   | |||||| ||| |||| || ||    
T  28521516 agagataatattataataatattgataatctatttagtttagtatcaattatgaataaatttgacttcttaaaatttcatagagctcaatttttgtagat 28521615  T
Q  112 aactattgttag 123  Q
    ||||||||||||    
T  28521616 aactattgttag 28521627  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 20 - 121
Target Start/End: Complemental strand, 33087961 - 33087858
Alignment:
Q  20 tgatattataaaaatattgataatctattttgtttagtgt---ttatggataaatttgacttctaaaaacaccttagagcacaacttttataaataacta 116  Q
    ||||||||  |||||||||||||||||||| |||||||||   |||| |||||| ||||||||| |||||  | || ||| |||||||||||||||| ||    
T  33087961 tgatattaataaaatattgataatctatttagtttagtgtcaattatagataaa-ttgacttcttaaaacttcataaagctcaacttttataaataatta 33087863  T
Q  117 ttgtt 121  Q
    |||||    
T  33087862 ttgtt 33087858  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 15 - 129
Target Start/End: Complemental strand, 28050831 - 28050714
Alignment:
Q  15 agagatgatattataaaaatattgataatctattttgtttagtgt---ttatggataaatttgacttctaaaaacaccttagagcacaacttttataaat 111  Q
    |||||||||| || |||||||| |||||||||||| ||||| |||   |||| ||||||||| | |||| ||| |  | |||| | ||||||||||| ||    
T  28050831 agagatgataataaaaaaatatggataatctatttagtttaatgtctattatagataaatttaatttcttaaatcttcatagaactcaacttttatagat 28050732  T
Q  112 aactattgttagcgttta 129  Q
    |||||||| |||| ||||    
T  28050731 aactattggtagctttta 28050714  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 15 - 129
Target Start/End: Complemental strand, 28146890 - 28146771
Alignment:
Q  15 agagatgatattataaaaatattgataatctattttgtttagtgt---ttatggataaatttgacttctaaaaacacc--ttagagcacaacttttataa 109  Q
    ||||||| | ||| ||||||||||||| |||| || |||||||||   |||||||||| |||||||||| |||||  |   |||| | ||| |||||||     
T  28146890 agagatgctcttaaaaaaatattgatattctaattagtttagtgtcaattatggataactttgacttctgaaaacttcatatagaactcaaattttatag 28146791  T
Q  110 ataactattgttagcgttta 129  Q
    ||||||||||||||| ||||    
T  28146790 ataactattgttagctttta 28146771  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 91 - 123
Target Start/End: Complemental strand, 45483789 - 45483757
Alignment:
Q  91 tagagcacaacttttataaataactattgttag 123  Q
    ||||||||||||||||||||||| |||||||||    
T  45483789 tagagcacaacttttataaataattattgttag 45483757  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 62; Significance: 1e-26; HSPs: 9)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 14 - 122
Target Start/End: Complemental strand, 29857503 - 29857392
Alignment:
Q  14 cagagatgatattataaaaatattgataatctattttgtttagtgtt---tatggataaatttgacttctaaaaacaccttagagcacaacttttataaa 110  Q
    ||||||||||  |||||||||||||||||||||||| ||||||||||   |||||||||| ||||||||||||||| | ||| ||| ||||||||||||     
T  29857503 cagagatgattctataaaaatattgataatctatttagtttagtgttaattatggataaaattgacttctaaaaactctttaaagctcaacttttataag 29857404  T
Q  111 taactattgtta 122  Q
    ||||||||||||    
T  29857403 taactattgtta 29857392  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 65 - 123
Target Start/End: Complemental strand, 20447814 - 20447756
Alignment:
Q  65 gataaatttgacttctaaaaacaccttagagcacaacttttataaataactattgttag 123  Q
    |||||||||||||||| | |||| | |||||| |||||||||||||||| |||||||||    
T  20447814 gataaatttgacttcttacaacatcatagagctcaacttttataaataattattgttag 20447756  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 30 - 123
Target Start/End: Original strand, 55250518 - 55250614
Alignment:
Q  30 aaaatattgataatctattttgtttagtgt---ttatggataaatttgacttctaaaaacaccttagagcacaacttttataaataactattgttag 123  Q
    |||||||||||||||||||| |||||||||   |||| |||||||||||||||| ||||     || ||| ||||||| |||||||| |||||||||    
T  55250518 aaaatattgataatctatttagtttagtgtcaattatagataaatttgacttcttaaaattttatatagctcaactttaataaataattattgttag 55250614  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 204 - 252
Target Start/End: Complemental strand, 29857322 - 29857274
Alignment:
Q  204 cttctttatatttggccccctcgtaaaaatagtgctagctacgtcgctg 252  Q
    ||||||||||||| ||||| |||||||||||||||||||| || |||||    
T  29857322 cttctttatatttagccccttcgtaaaaatagtgctagcttcgccgctg 29857274  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 35 - 129
Target Start/End: Complemental strand, 1101166 - 1101069
Alignment:
Q  35 attgataatctattttgtttagtgtt---tatggataaatttgacttctaaaaacaccttagagcacaacttttataaataactattgttagcgttta 129  Q
    ||||||||||||||| |||||||||    ||| |||||||||| ||||| ||||| |  |||||| || |||||| |||||||||||| |||| ||||    
T  1101166 attgataatctatttagtttagtgtcaactatagataaatttgtcttcttaaaactcaatagagctcatcttttacaaataactattggtagctttta 1101069  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 60 - 110
Target Start/End: Original strand, 46964062 - 46964112
Alignment:
Q  60 ttatggataaatttgacttctaaaaacaccttagagcacaacttttataaa 110  Q
    ||||||||||||||||||||| ||||| || | |||| |||||||||||||    
T  46964062 ttatggataaatttgacttcttaaaactccatcgagctcaacttttataaa 46964112  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 204 - 242
Target Start/End: Complemental strand, 47668786 - 47668748
Alignment:
Q  204 cttctttatatttggccccctcgtaaaaatagtgctagc 242  Q
    ||||||||||||| |||||||||||||||| ||||||||    
T  47668786 cttctttatattttgccccctcgtaaaaattgtgctagc 47668748  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 204 - 240
Target Start/End: Complemental strand, 20447647 - 20447611
Alignment:
Q  204 cttctttatatttggccccctcgtaaaaatagtgcta 240  Q
    |||||||||||||||||||||| ||||||| ||||||    
T  20447647 cttctttatatttggccccctcataaaaattgtgcta 20447611  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 30 - 113
Target Start/End: Complemental strand, 47668992 - 47668906
Alignment:
Q  30 aaaatattgataatctattttgtttagtgt---ttatggataaatttgacttctaaaaacaccttagagcacaacttttataaataa 113  Q
    ||||||||||||||||||||  ||||||||   |||| ||||||||||| |||| |||||    |||||  ||||||||||||||||    
T  47668992 aaaatattgataatctatttaatttagtgtcaattatagataaatttgatttcttaaaactttatagagttcaacttttataaataa 47668906  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 36; Significance: 0.00000000004; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 15 - 113
Target Start/End: Original strand, 4017104 - 4017205
Alignment:
Q  15 agagatgatattataaaaatattgataatctattttgtttagtgtt---tatggataaatttgacttctaaaaacaccttagagcacaacttttataaat 111  Q
    ||||||||||||| ||| | |||  |||||||||| ||||||||||   |||| ||||||||||||||| ||||| |  |||| | ||||||||||||||    
T  4017104 agagatgatattaaaaatacatttgtaatctatttagtttagtgttaattatgaataaatttgacttctgaaaactcgatagaactcaacttttataaat 4017203  T
Q  112 aa 113  Q
    ||    
T  4017204 aa 4017205  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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