View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18105_low_9 (Length: 402)
Name: NF18105_low_9
Description: NF18105
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18105_low_9 |
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Alignment Details
Target: chr6 (Bit Score: 288; Significance: 1e-161; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 288; E-Value: 1e-161
Query Start/End: Original strand, 13 - 385
Target Start/End: Complemental strand, 827658 - 827286
Alignment:
| Q |
13 |
tgaacaataaatcataactttgaattagaattaattatggaggcaaaagcatccaaacttgtcataactaagtgggtttagttgtgagaacgttttatgt |
112 |
Q |
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| T |
827658 |
tgaacaataaatcataactttgaattagaattaattatggaggcaaaatcatccaaacttgtcataactaagtgg-tttagttgtgaggacgttttatgt |
827560 |
T |
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| Q |
113 |
gaaatcataatttcgaacctggatcaccatatatccgcatcttgtgtatgtattatttcaatttcaatagctatatnnnnnnngaagaaaaag-----ga |
207 |
Q |
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| T |
827559 |
gaaatcataatttcgaacctggatcaccacatatccgcatcttgtgtatgtattatttcaatttcaatagctatataaagaaagaagaaaaaggattaga |
827460 |
T |
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| Q |
208 |
ttattcaataataacacgttcttgaactttttgccatgtatatgttatgcaaatcatttggtggaattattagcatgcaatataaatttgaaaataaaac |
307 |
Q |
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|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| ||||||||||||||||||||||||||||||| ||||| |
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| T |
827459 |
ttattcaataataacacgttcttgaactttttgccatgta----ttatgcaaatcatttggtagaattattagcatgcaatataaatttgaaaacaaaac |
827364 |
T |
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| Q |
308 |
gtgatttcactcctcagcttcacttgacacaaacaaaacaacatggccaatatgtagatgacacaaatatcacagata |
385 |
Q |
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| T |
827363 |
gtgatttcactcctcagcttcacttgacacaaacaaaacaacatgcccaatatgtagatgacacaaatatcacagata |
827286 |
T |
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