View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18106_high_13 (Length: 333)
Name: NF18106_high_13
Description: NF18106
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18106_high_13 |
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Alignment Details
Target: chr1 (Bit Score: 303; Significance: 1e-170; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 303; E-Value: 1e-170
Query Start/End: Original strand, 15 - 317
Target Start/End: Original strand, 26890273 - 26890575
Alignment:
| Q |
15 |
gaggattccattggattggacaacaagaataagcttggtattgggagcagcaagagggcttgctaggatccatacagagtacagtgcagcaaaagtgcca |
114 |
Q |
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| T |
26890273 |
gaggattccattggattggacaacaagaataagcttggtattgggagcagcaagagggcttgctaggatccatacagagtacagtgcagcaaaagtgcca |
26890372 |
T |
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| Q |
115 |
catgggaacgtgaaatcatccaatgtactacttgacaagaacggtgttgcttgcatatctgactttgggttgtcactactgttaaaccctgttcatgcaa |
214 |
Q |
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| T |
26890373 |
catgggaacgtgaaatcatccaatgtactacttgacaagaacggtgttgcttgcatatctgactttgggttgtcactactgttaaaccctgttcatgcaa |
26890472 |
T |
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| Q |
215 |
ctgcacgattgggtgggtacagagcacctgaacagacagaacaaaagagactgtctcagcaagctgatgtctacagttttggagtgttgctgttggaagt |
314 |
Q |
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| T |
26890473 |
ctgcacgattgggtgggtacagagcacctgaacagacagaacaaaagagactgtctcagcaagctgatgtctacagttttggagtgttgctgttggaagt |
26890572 |
T |
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| Q |
315 |
tct |
317 |
Q |
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||| |
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| T |
26890573 |
tct |
26890575 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 82; Significance: 1e-38; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 16 - 249
Target Start/End: Complemental strand, 41846724 - 41846491
Alignment:
| Q |
16 |
aggattccattggattggacaacaagaataagcttggtattgggagcagcaagagggcttgctaggatccatacagagtacagtgcagcaaaagtgccac |
115 |
Q |
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| T |
41846724 |
aggattccgttagattggacaacaagaataagcttggtgttgggggcagcaagaggcctagcaaggattcatggagagtatagtgcagcaaagatacctc |
41846625 |
T |
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| Q |
116 |
atgggaacgtgaaatcatccaatgtactacttgacaagaacggtgttgcttgcatatctgactttgggttgtcactactgttaaaccctgttcatgcaac |
215 |
Q |
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| T |
41846624 |
atggaaatgtgaaatcatcaaatgtgatacttgacaagaatggggttgcttgcataggtgactttggtttgtcactgttattaaaccctgctcacgcagt |
41846525 |
T |
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| Q |
216 |
tgcacgattgggtgggtacagagcacctgaacag |
249 |
Q |
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| T |
41846524 |
tgcaaggctgggtgggtacagggctccagaacag |
41846491 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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