View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF18106_high_21 (Length: 238)
Name: NF18106_high_21
Description: NF18106
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18106_high_21 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 209; Significance: 1e-114; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 209; E-Value: 1e-114
Query Start/End: Original strand, 18 - 230
Target Start/End: Complemental strand, 49988265 - 49988053
Alignment:
| Q |
18 |
gttacttgaataatttgtttatccctaaataagcactcctatgatcgtatgcacaataatgtaaatgtagctttaaaatactgtcacaagtttacctttc |
117 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
49988265 |
gttacttgaataatttgtttatccctaaataagcactcctatgatcgtatgcacaataatgtaaatgtagctttaaaatactgtcacaagtttacctttc |
49988166 |
T |
|
| Q |
118 |
acagccagctggcacatacacccaacaatttcagcaacagatgaactgtatactccaccagaaagagggagcataaaagcatatgctccacttcttagta |
217 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
49988165 |
acagccagctggcacatacacccaacaatttcagcaacagatgaactgtatactccatcagaaagagggagcataaaagcatatgctccacttcttagta |
49988066 |
T |
|
| Q |
218 |
aatagacctataa |
230 |
Q |
| |
|
||||||||||||| |
|
|
| T |
49988065 |
aatagacctataa |
49988053 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 62; Significance: 6e-27; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 109 - 222
Target Start/End: Original strand, 42301579 - 42301692
Alignment:
| Q |
109 |
ttacctttcacagccagctggcacatacacccaacaatttcagcaacagatgaactgtatactccaccagaaagagggagcataaaagcatatgctccac |
208 |
Q |
| |
|
|||||||||||| ||| ||||||||| || |||||||| |||||||||| ||||||| | ||||||||||||||||||||| |||| || ||||||||| |
|
|
| T |
42301579 |
ttacctttcacaaccatctggcacatgcatccaacaatcgcagcaacagaggaactgtctgctccaccagaaagagggagcagaaaaccagatgctccac |
42301678 |
T |
|
| Q |
209 |
ttcttagtaaatag |
222 |
Q |
| |
|
||||| |||||||| |
|
|
| T |
42301679 |
ttcttcgtaaatag |
42301692 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University