View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18106_high_22 (Length: 237)

Name: NF18106_high_22
Description: NF18106
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18106_high_22
NF18106_high_22
[»] chr1 (8 HSPs)
chr1 (1-226)||(32630296-32630521)
chr1 (31-226)||(32580983-32581178)
chr1 (119-226)||(32579311-32579419)
chr1 (32-170)||(32610137-32610273)
chr1 (5-159)||(32511206-32511364)
chr1 (77-196)||(19808747-19808867)
chr1 (98-136)||(32500848-32500886)
chr1 (102-169)||(19809050-19809118)
[»] chr5 (2 HSPs)
chr5 (79-198)||(28827192-28827309)
chr5 (99-135)||(4484219-4484255)
[»] chr4 (2 HSPs)
chr4 (77-160)||(40829659-40829743)
chr4 (81-135)||(6986687-6986741)
[»] chr6 (4 HSPs)
chr6 (102-159)||(27368579-27368637)
chr6 (102-159)||(27458926-27458984)
chr6 (79-135)||(29246406-29246462)
chr6 (147-195)||(7712348-7712396)
[»] chr2 (2 HSPs)
chr2 (80-154)||(31352838-31352912)
chr2 (78-135)||(42960615-42960672)
[»] chr7 (2 HSPs)
chr7 (79-168)||(21091045-21091135)
chr7 (81-135)||(30606226-30606280)
[»] chr3 (1 HSPs)
chr3 (79-135)||(20668293-20668349)


Alignment Details
Target: chr1 (Bit Score: 193; Significance: 1e-105; HSPs: 8)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 193; E-Value: 1e-105
Query Start/End: Original strand, 1 - 226
Target Start/End: Complemental strand, 32630521 - 32630296
Alignment:
Q  1 tcatcacaatttacatggttaatagatataatatattttaatattggaaaaaccatgtttaataccgctnnnnnnntgtggttaattgtgtttaatgaat 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  ||||       ||||||||||||||||||||||||    
T  32630521 tcatcacaatttacatggttaatagatataatatattttaatattggaaaaaccatgtttaatgacgctaaaaaaatgtggttaattgtgtttaatgaat 32630422  T
Q  101 tgttaatgagttgcgacaacttgttatattcattagtcattactaaacgtaattaaccacgtaattgaacaatgttagccatctaaattgttgtcaaatt 200  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |    
T  32630421 tgttaatgagttgcgacaacttgttatattcattagtcattactaaacgtaattaaccacgtaattgaacaatgttagccatctaaattgttgtcaaact 32630322  T
Q  201 tatgtgcattgaaccattaattgatg 226  Q
    ||||||||||||||||||||||||||    
T  32630321 tatgtgcattgaaccattaattgatg 32630296  T

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Target: chr1; HSP #2
Raw Score: 131; E-Value: 4e-68
Query Start/End: Original strand, 31 - 226
Target Start/End: Complemental strand, 32581178 - 32580983
Alignment:
Q  31 atatattttaatattggaaaaaccatgtttaataccgctnnnnnnntgtggttaattgtgtttaatgaattgttaatgagttgcgacaacttgttatatt 130  Q
    ||||||||||||||| |||||||||||||||||  ||||       |||||||||||||||||| || |||||||||||||||||||| |||||||||||    
T  32581178 atatattttaatattcgaaaaaccatgtttaatgacgctaaaaaaatgtggttaattgtgtttagtggattgttaatgagttgcgacagcttgttatatt 32581079  T
Q  131 cattagtcattactaaacgtaattaaccacgtaattgaacaatgttagccatctaaattgttgtcaaatttatgtgcattgaaccattaattgatg 226  Q
    ||||| || |||||||||||||||||||| ||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||    
T  32581078 cattattcgttactaaacgtaattaaccatgtagttgaacaatgttaaccatctaaattgttgtcaaatttatgtgcattgaaccattaattgatg 32580983  T

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Target: chr1; HSP #3
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 119 - 226
Target Start/End: Complemental strand, 32579419 - 32579311
Alignment:
Q  119 acttgttatattcattagtcattactaaacgtaattaaccacgtaattgaacaatgttagccatctaaattgttgtcaaatttatgtg-cattgaaccat 217  Q
    |||||||||||||||| ||||| ||||| ||||||||| ||| |||||||||  |||||  ||||||||||||||||||||||||||| |||||||||||    
T  32579419 acttgttatattcattggtcatcactaagcgtaattaatcacataattgaactgtgttaatcatctaaattgttgtcaaatttatgtgtcattgaaccat 32579320  T
Q  218 taattgatg 226  Q
    |||||||||    
T  32579319 taattgatg 32579311  T

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Target: chr1; HSP #4
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 32 - 170
Target Start/End: Complemental strand, 32610273 - 32610137
Alignment:
Q  32 tatattttaatattggaaaaaccatgtttaataccgctnnnnnnntgtggttaattgtgtttaatgaattgttaatgagttgcgacaacttgttatattc 131  Q
    ||||||||||||||||||||| ||||||||||  |||        |||||||||||||||||| |  |||| |||  |||||||||||||||||||||||    
T  32610273 tatattttaatattggaaaaatcatgtttaatcacgc--aaaatatgtggttaattgtgtttagtagattgctaacaagttgcgacaacttgttatattc 32610176  T
Q  132 attagtcattactaaacgtaattaaccacgtaattgaac 170  Q
    ||||||||| | |||| ||||||| |||| ||| |||||    
T  32610175 attagtcatgattaaaagtaattagccacataaatgaac 32610137  T

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Target: chr1; HSP #5
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 5 - 159
Target Start/End: Original strand, 32511206 - 32511364
Alignment:
Q  5 cacaatttacatggttaatagatataata---tattttaatattggaaaaaccatgtttaataccgctnnnnnnn-tgtggttaattgtgtttaatgaat 100  Q
    ||||||||  |||||||||||||||||||   |||||||||||  |||||| | ||||||||  ||||        ||||||||| |||||| |||  ||    
T  32511206 cacaattttgatggttaatagatataatagtatattttaatatctgaaaaatcttgtttaatgacgctgaaaaacatgtggttaaatgtgttcaattcat 32511305  T
Q  101 tgttaatgagttgcgacaacttgttatattcattagtcattactaaacgtaattaacca 159  Q
    |||||||||| | ||| ||||||||||||||| ||| ||| ||||||| ||||||||||    
T  32511306 tgttaatgagcttcgagaacttgttatattcagtagccatcactaaacataattaacca 32511364  T

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Target: chr1; HSP #6
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 77 - 196
Target Start/End: Complemental strand, 19808867 - 19808747
Alignment:
Q  77 tgtggttaattgtgtttaatgaattgttaatgagttgcgacaacttgttatattcattagtcatt-actaaacgtaattaaccacgtaattgaacaatgt 175  Q
    ||||||||||| |||| |||| ||  ||| ||||||| |||| |||||||||||| |||  |||  ||||||||||||| ||||| || ||||||  |||    
T  19808867 tgtggttaattatgttcaatggatgattactgagttgtgacaccttgttatattcgttaaccatccactaaacgtaatttaccacatatttgaacggtgt 19808768  T
Q  176 tagccatctaaattgttgtca 196  Q
    || ||||| ||||||||||||    
T  19808767 taaccatccaaattgttgtca 19808747  T

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Target: chr1; HSP #7
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 98 - 136
Target Start/End: Original strand, 32500848 - 32500886
Alignment:
Q  98 aattgttaatgagttgcgacaacttgttatattcattag 136  Q
    |||||||||||||||||||||||||||||||| ||||||    
T  32500848 aattgttaatgagttgcgacaacttgttatatccattag 32500886  T

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Target: chr1; HSP #8
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 102 - 169
Target Start/End: Original strand, 19809050 - 19809118
Alignment:
Q  102 gttaatgagttgcgacaacttgttatattcattagtcat-tactaaacgtaattaaccacgtaattgaa 169  Q
    ||||||||||||  ||| |||||||||||||||| |||| ||||||| ||||||||||| ||| |||||    
T  19809050 gttaatgagttgtaacaccttgttatattcattaatcatctactaaatgtaattaaccatgtatttgaa 19809118  T

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Target: chr5 (Bit Score: 49; Significance: 4e-19; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 79 - 198
Target Start/End: Complemental strand, 28827309 - 28827192
Alignment:
Q  79 tggttaattgtgtttaatgaattgttaatgagttgcgacaacttgttatattcattagtcattactaaacgtaattaaccacgtaattgaacaatgttag 178  Q
    ||||||||| |||||||||||| |||||| | ||| |||| ||||||||||||||||   || ||||||||||||||||||| || ||||||  |||||     
T  28827309 tggttaattttgtttaatgaatggttaataacttgtgacatcttgttatattcattaactatcactaaacgtaattaaccacatatttgaac--tgttac 28827212  T
Q  179 ccatctaaattgttgtcaaa 198  Q
     ||||| |||||||||||||    
T  28827211 tcatctgaattgttgtcaaa 28827192  T

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Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 99 - 135
Target Start/End: Original strand, 4484219 - 4484255
Alignment:
Q  99 attgttaatgagttgcgacaacttgttatattcatta 135  Q
    ||||||||||||||||||||  |||||||||||||||    
T  4484219 attgttaatgagttgcgacattttgttatattcatta 4484255  T

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Target: chr4 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 77 - 160
Target Start/End: Original strand, 40829659 - 40829743
Alignment:
Q  77 tgtggttaattgtgtttaatgaattgttaatgagttgcgacaacttgttatattcattagtcat-tactaaacgtaattaaccac 160  Q
    |||||||||||||| | | || || ||||||||||||| ||| |||||||||||||||| ||||  |||||||||||||||||||    
T  40829659 tgtggttaattgtgctcagtggatggttaatgagttgctacaccttgttatattcattaatcatcaactaaacgtaattaaccac 40829743  T

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Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 81 - 135
Target Start/End: Original strand, 6986687 - 6986741
Alignment:
Q  81 gttaattgtgtttaatgaattgttaatgagttgcgacaacttgttatattcatta 135  Q
    ||||||| ||||||||| || ||||||||||||| ||| ||||| ||||||||||    
T  6986687 gttaattatgtttaatggatggttaatgagttgcaacaccttgtcatattcatta 6986741  T

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Target: chr6 (Bit Score: 35; Significance: 0.00000000008; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 102 - 159
Target Start/End: Original strand, 27368579 - 27368637
Alignment:
Q  102 gttaatgagttgcgacaacttgttatattcattagtcat-tactaaacgtaattaacca 159  Q
    |||| ||||||||||||| ||||||||||||||| |||| ||||| |||||||||||||    
T  27368579 gttagtgagttgcgacaatttgttatattcattaatcatctactacacgtaattaacca 27368637  T

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Target: chr6; HSP #2
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 102 - 159
Target Start/End: Original strand, 27458926 - 27458984
Alignment:
Q  102 gttaatgagttgcgacaacttgttatattcattagtcat-tactaaacgtaattaacca 159  Q
    |||| ||||||||||||| ||||||||||||||| |||| ||||| |||||||||||||    
T  27458926 gttagtgagttgcgacaatttgttatattcattaatcatctactacacgtaattaacca 27458984  T

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Target: chr6; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 79 - 135
Target Start/End: Original strand, 29246406 - 29246462
Alignment:
Q  79 tggttaattgtgtttaatgaattgttaatgagttgcgacaacttgttatattcatta 135  Q
    ||||||||| |||| | || || ||||||||||||||||| ||||||||||||||||    
T  29246406 tggttaattatgttcagtgtatggttaatgagttgcgacaccttgttatattcatta 29246462  T

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Target: chr6; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 147 - 195
Target Start/End: Original strand, 7712348 - 7712396
Alignment:
Q  147 acgtaattaaccacgtaattgaacaatgttagccatctaaattgttgtc 195  Q
    |||||||||||||| || |||||| |||||| ||||||||| |||||||    
T  7712348 acgtaattaaccacatatttgaactatgttaaccatctaaactgttgtc 7712396  T

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Target: chr2 (Bit Score: 32; Significance: 0.000000005; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 80 - 154
Target Start/End: Complemental strand, 31352912 - 31352838
Alignment:
Q  80 ggttaattgtgtttaatgaattgttaatgagttgcgacaacttgttatattcattagtcat-tactaaacgtaatt 154  Q
    ||||| |||| || ||||||| |||||| |||||||||| ||||||||||||||||  ||| ||||||||||||||    
T  31352912 ggttatttgtcttgaatgaatggttaattagttgcgaca-cttgttatattcattaaccatctactaaacgtaatt 31352838  T

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Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 78 - 135
Target Start/End: Original strand, 42960615 - 42960672
Alignment:
Q  78 gtggttaattgtgtttaatgaattgttaatgagttgcgacaacttgttatattcatta 135  Q
    |||||||||||||||   | ||| ||||||||||||||||| ||||| ||||||||||    
T  42960615 gtggttaattgtgttcggtaaatggttaatgagttgcgacatcttgtaatattcatta 42960672  T

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Target: chr7 (Bit Score: 31; Significance: 0.00000002; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 79 - 168
Target Start/End: Complemental strand, 21091135 - 21091045
Alignment:
Q  79 tggttaattgtgtttaatgaattgttaatgagttgcgacaacttgttatattcattagtca-ttactaaacgtaattaaccacgtaattga 168  Q
    |||||||||||||||  ||||| |  ||||||||| |||| |||||| || |||||| ||| ||||||||||||| |||||| ||| ||||    
T  21091135 tggttaattgtgttttgtgaatgggcaatgagttgtgacaccttgttttagtcattaatcatttactaaacgtaaataaccatgtatttga 21091045  T

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Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 81 - 135
Target Start/End: Original strand, 30606226 - 30606280
Alignment:
Q  81 gttaattgtgtttaatgaattgttaatgagttgcgacaacttgttatattcatta 135  Q
    ||||||| ||||||||||||  |||||||||||| ||| ||||| ||||||||||    
T  30606226 gttaattatgtttaatgaatgcttaatgagttgcaacaccttgtgatattcatta 30606280  T

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Target: chr3 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 79 - 135
Target Start/End: Original strand, 20668293 - 20668349
Alignment:
Q  79 tggttaattgtgtttaatgaattgttaatgagttgcgacaacttgttatattcatta 135  Q
    |||||||||||| | | | ||| ||||||||||||||||| ||||| ||||||||||    
T  20668293 tggttaattgtgatcattaaatggttaatgagttgcgacaccttgtcatattcatta 20668349  T

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