View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18106_low_1 (Length: 811)

Name: NF18106_low_1
Description: NF18106
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18106_low_1
NF18106_low_1
[»] chr4 (7 HSPs)
chr4 (25-134)||(56295979-56296088)
chr4 (519-631)||(35055944-35056056)
chr4 (522-630)||(40145392-40145500)
chr4 (522-625)||(756826-756929)
chr4 (519-631)||(16038859-16038971)
chr4 (522-625)||(702273-702376)
chr4 (522-625)||(770572-770675)
[»] chr3 (8 HSPs)
chr3 (497-635)||(23560742-23560880)
chr3 (520-631)||(12061013-12061124)
chr3 (523-631)||(48866558-48866667)
chr3 (185-254)||(23560461-23560530)
chr3 (410-471)||(23560655-23560716)
chr3 (762-811)||(23561006-23561055)
chr3 (185-232)||(12061426-12061473)
chr3 (522-591)||(48866644-48866714)
[»] chr6 (8 HSPs)
chr6 (519-631)||(14326519-14326631)
chr6 (519-631)||(14419529-14419641)
chr6 (519-631)||(21283300-21283416)
chr6 (521-607)||(16269374-16269460)
chr6 (762-811)||(14326340-14326389)
chr6 (762-811)||(14419350-14419399)
chr6 (410-471)||(14326657-14326718)
chr6 (410-471)||(14419667-14419728)
[»] chr8 (7 HSPs)
chr8 (519-631)||(39567666-39567778)
chr8 (519-631)||(45377721-45377833)
chr8 (520-631)||(8096183-8096294)
chr8 (521-602)||(13366123-13366204)
chr8 (185-254)||(13366487-13366556)
chr8 (519-591)||(39270195-39270267)
chr8 (185-226)||(8095921-8095962)
[»] chr7 (3 HSPs)
chr7 (519-631)||(21709924-21710036)
chr7 (522-625)||(26025518-26025621)
chr7 (522-587)||(33458702-33458767)
[»] chr1 (4 HSPs)
chr1 (523-631)||(2972088-2972196)
chr1 (519-631)||(16962756-16962868)
chr1 (522-631)||(51598589-51598698)
chr1 (519-631)||(40812236-40812348)
[»] scaffold0122 (2 HSPs)
scaffold0122 (497-631)||(16836-16970)
scaffold0122 (185-250)||(16543-16608)
[»] chr2 (2 HSPs)
chr2 (497-631)||(14510130-14510264)
chr2 (185-254)||(14509803-14509872)
[»] scaffold0031 (2 HSPs)
scaffold0031 (522-625)||(123761-123864)
scaffold0031 (567-625)||(134632-134690)


Alignment Details
Target: chr4 (Bit Score: 106; Significance: 1e-52; HSPs: 7)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 106; E-Value: 1e-52
Query Start/End: Original strand, 25 - 134
Target Start/End: Complemental strand, 56296088 - 56295979
Alignment:
Q  25 ataattatagctaaagtcattggtagaaaacatatacattactgttgaaatataatgatgtgttggttttgagagtgtttaaatgtttattaattattaa 124  Q
    |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  56296088 ataattatagctaaagtcattggtagaaaaaatatacattactgttgaaatataatgatgtgttggttttgagagtgtttaaatgtttattaattattaa 56295989  T
Q  125 tattaatatt 134  Q
    ||||||||||    
T  56295988 tattaatatt 56295979  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 69; E-Value: 2e-30
Query Start/End: Original strand, 519 - 631
Target Start/End: Original strand, 35055944 - 35056056
Alignment:
Q  519 tgggtttagattggaatttgaaagtgtttagattagatccaaaaatgggtttagattggaatatgaaaggattaatattgatgatgaatgattggaattc 618  Q
    |||||||||||||| ||||| |||  |||||||||||||||||||| |||||||||| |||| |||||||||| ||||||||||||||||||||  ||||    
T  35055944 tgggtttagattgggatttggaagaatttagattagatccaaaaataggtttagattagaatttgaaaggattgatattgatgatgaatgattgacattc 35056043  T
Q  619 gaaaatgagtttt 631  Q
     ||||||||||||    
T  35056044 aaaaatgagtttt 35056056  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 69; E-Value: 2e-30
Query Start/End: Original strand, 522 - 630
Target Start/End: Original strand, 40145392 - 40145500
Alignment:
Q  522 gtttagattggaatttgaaagtgtttagattagatccaaaaatgggtttagattggaatatgaaaggattaatattgatgatgaatgattggaattcgaa 621  Q
    ||||| ||||||||||| ||| ||||| |||||||||| |||||||||||||||||||| |||||||||| ||  |||||||||| ||||||||||||||    
T  40145392 gtttaaattggaatttggaagagtttaaattagatccataaatgggtttagattggaatttgaaaggattgatgctgatgatgaaggattggaattcgaa 40145491  T
Q  622 aatgagttt 630  Q
    |||||||||    
T  40145492 aatgagttt 40145500  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 68; E-Value: 6e-30
Query Start/End: Original strand, 522 - 625
Target Start/End: Complemental strand, 756929 - 756826
Alignment:
Q  522 gtttagattggaatttgaaagtgtttagattagatccaaaaatgggtttagattggaatatgaaaggattaatattgatgatgaatgattggaattcgaa 621  Q
    ||||||||||| ||||| |||  |||||||||||||||||||||||||||||||||||| ||||||||||  |||||||||||||||||||  |||||||    
T  756929 gtttagattgggatttggaagaatttagattagatccaaaaatgggtttagattggaatttgaaaggattgctattgatgatgaatgattgacattcgaa 756830  T
Q  622 aatg 625  Q
    ||||    
T  756829 aatg 756826  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 65; E-Value: 4e-28
Query Start/End: Original strand, 519 - 631
Target Start/End: Original strand, 16038859 - 16038971
Alignment:
Q  519 tgggtttagattggaatttgaaagtgtttagattagatccaaaaatgggtttagattggaatatgaaaggattaatattgatgatgaatgattggaattc 618  Q
    |||||||||||||| ||||| |||  |||||||||||||||||||| |||||||||| |||| |||||||||| ||||||| ||||||||||||| ||||    
T  16038859 tgggtttagattgggatttggaagaatttagattagatccaaaaatcggtttagatttgaatttgaaaggattgatattgacgatgaatgattggcattc 16038958  T
Q  619 gaaaatgagtttt 631  Q
     ||||| ||||||    
T  16038959 aaaaattagtttt 16038971  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 522 - 625
Target Start/End: Original strand, 702273 - 702376
Alignment:
Q  522 gtttagattggaatttgaaagtgtttagattagatccaaaaatgggtttagattggaatatgaaaggattaatattgatgatgaatgattggaattcgaa 621  Q
    ||||||||| | ||||| |||  ||||||||||||||||||||| |||||||||||||| ||||||||||  |||||||||||||||||||| |||||||    
T  702273 gtttagattaggatttggaagaatttagattagatccaaaaatgagtttagattggaatttgaaaggattgctattgatgatgaatgattggcattcgaa 702372  T
Q  622 aatg 625  Q
    ||||    
T  702373 aatg 702376  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 522 - 625
Target Start/End: Original strand, 770572 - 770675
Alignment:
Q  522 gtttagattggaatttgaaagtgtttagattagatccaaaaatgggtttagattggaatatgaaaggattaatattgatgatgaatgattggaattcgaa 621  Q
    ||||||||| | ||||| |||  ||||||||||||||||||||| |||||||||||||| ||||||||||  |||||||||||||||||||| |||||||    
T  770572 gtttagattaggatttggaagaatttagattagatccaaaaatgagtttagattggaatttgaaaggattgctattgatgatgaatgattggcattcgaa 770671  T
Q  622 aatg 625  Q
    ||||    
T  770672 aatg 770675  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 106; Significance: 1e-52; HSPs: 8)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 106; E-Value: 1e-52
Query Start/End: Original strand, 497 - 635
Target Start/End: Original strand, 23560742 - 23560880
Alignment:
Q  497 tgggttaatgttcatnnnnnnntgggtttagattggaatttgaaagtgtttagattagatccaaaaatgggtttagattggaatatgaaaggattaatat 596  Q
    |||||||||||||||       ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||     
T  23560742 tgggttaatgttcataaaaaaatgggtttggattggaatttgaaagtgtttagattagatccaaaaatgggtttagattggaatatgaaaggattaatac 23560841  T
Q  597 tgatgatgaatgattggaattcgaaaatgagttttgtat 635  Q
    | |||||||||||||||||||||||||||||||||||||    
T  23560842 taatgatgaatgattggaattcgaaaatgagttttgtat 23560880  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 72; E-Value: 3e-32
Query Start/End: Original strand, 520 - 631
Target Start/End: Complemental strand, 12061124 - 12061013
Alignment:
Q  520 gggtttagattggaatttgaaagtgtttagattagatccaaaaatgggtttagattggaatatgaaaggattaatattgatgatgaatgattggaattcg 619  Q
    ||||||||||||| ||||| ||| ||||||||||||||||||||||| |||||||| ||||||||||||||| || ||||||||||| ||||| ||||||    
T  12061124 gggtttagattgggatttggaagagtttagattagatccaaaaatggatttagattagaatatgaaaggattgatgttgatgatgaaggattgtaattcg 12061025  T
Q  620 aaaatgagtttt 631  Q
    |||| |||||||    
T  12061024 aaaaagagtttt 12061013  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 70; E-Value: 4e-31
Query Start/End: Original strand, 523 - 631
Target Start/End: Complemental strand, 48866667 - 48866558
Alignment:
Q  523 tttagattggaatttgaaagtgtttagattagatccaaaaatgggttt-agattggaatatgaaaggattaatattgatgatgaatgattggaattcgaa 621  Q
    ||||||||| ||||||||||  |||||||||||||||||||||||||| |||||| ||| |||||||||| || ||||||||||| ||||||||||||||    
T  48866667 tttagattgaaatttgaaaggatttagattagatccaaaaatgggttttagattgaaatttgaaaggattgatgttgatgatgaaggattggaattcgaa 48866568  T
Q  622 aatgagtttt 631  Q
    ||||||||||    
T  48866567 aatgagtttt 48866558  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 185 - 254
Target Start/End: Original strand, 23560461 - 23560530
Alignment:
Q  185 ctagaattgaattggcaaatctggaaagaacagaaggaacaaaaacaaaaacgcatgaggaaacaataca 254  Q
    ||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||    
T  23560461 ctagaattgaattggtaaatctggaaagaacagaaggaacaacaacaaaaacgcatgaggaaacaataca 23560530  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 410 - 471
Target Start/End: Original strand, 23560655 - 23560716
Alignment:
Q  410 caaatctgattcccaaatctgattctcatttttccctttcaatccggtctaaatcagctccc 471  Q
    |||||||| | |||||||||||||||||||||||||||| ||||||||||||||||||||||    
T  23560655 caaatctgctccccaaatctgattctcatttttcccttttaatccggtctaaatcagctccc 23560716  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 46; E-Value: 8e-17
Query Start/End: Original strand, 762 - 811
Target Start/End: Original strand, 23561006 - 23561055
Alignment:
Q  762 attagtaagtaattcaatagaaatgaatatgatcctatgttgtaagttca 811  Q
    ||||||||| ||||||||||||||||||||||||||||||||||||||||    
T  23561006 attagtaagaaattcaatagaaatgaatatgatcctatgttgtaagttca 23561055  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 185 - 232
Target Start/End: Complemental strand, 12061473 - 12061426
Alignment:
Q  185 ctagaattgaattggcaaatctggaaagaacagaaggaacaaaaacaa 232  Q
    ||||||||||||||| |||||||||||||||||||||||||| |||||    
T  12061473 ctagaattgaattggtaaatctggaaagaacagaaggaacaacaacaa 12061426  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 522 - 591
Target Start/End: Complemental strand, 48866714 - 48866644
Alignment:
Q  522 gtttagattggaatttgaaagtgtttagattagatccaaaaatggg-tttagattggaatatgaaaggatt 591  Q
    ||||| |||| |||||| ||| |||||||||||||||||||||||| ||||||||| ||| ||||||||||    
T  48866714 gtttaaattgaaatttggaagggtttagattagatccaaaaatgggttttagattgaaatttgaaaggatt 48866644  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 93; Significance: 7e-45; HSPs: 8)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 93; E-Value: 7e-45
Query Start/End: Original strand, 519 - 631
Target Start/End: Complemental strand, 14326631 - 14326519
Alignment:
Q  519 tgggtttagattggaatttgaaagtgtttagattagatccaaaaatgggtttagattggaatatgaaaggattaatattgatgatgaatgattggaattc 618  Q
    |||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||  |||||||||| |||||||||||    
T  14326631 tgggtttagattgggatttggaagtgtttagattagatccaaaaatgggtttagattggaatatgaaaggattaatgctgatgatgaaggattggaattc 14326532  T
Q  619 gaaaatgagtttt 631  Q
    |||||||||||||    
T  14326531 gaaaatgagtttt 14326519  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 93; E-Value: 7e-45
Query Start/End: Original strand, 519 - 631
Target Start/End: Complemental strand, 14419641 - 14419529
Alignment:
Q  519 tgggtttagattggaatttgaaagtgtttagattagatccaaaaatgggtttagattggaatatgaaaggattaatattgatgatgaatgattggaattc 618  Q
    |||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||  |||||||||| |||||||||||    
T  14419641 tgggtttagattgggatttggaagtgtttagattagatccaaaaatgggtttagattggaatatgaaaggattaatgctgatgatgaaggattggaattc 14419542  T
Q  619 gaaaatgagtttt 631  Q
    |||||||||||||    
T  14419541 gaaaatgagtttt 14419529  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 56; E-Value: 9e-23
Query Start/End: Original strand, 519 - 631
Target Start/End: Complemental strand, 21283416 - 21283300
Alignment:
Q  519 tgggtttagattggaatttgaaagtgtttagattagatccaaaaatgggtttagattggaatatgaaagg----attaatattgatgatgaatgattgga 614  Q
    |||||||||||||| ||||| |||  |||||||||||||||||| ||||||||||||||||| |||||||    |||  ||||||| |||||||||||      
T  21283416 tgggtttagattgggatttggaagaatttagattagatccaaaattgggtttagattggaatttgaaaggatatattgctattgataatgaatgattgac 21283317  T
Q  615 attcgaaaatgagtttt 631  Q
    |||||||||||||||||    
T  21283316 attcgaaaatgagtttt 21283300  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 521 - 607
Target Start/End: Original strand, 16269374 - 16269460
Alignment:
Q  521 ggtttagattggaatttgaaagtgtttagattagatccaaaaatgggtttagattggaatatgaaaggattaatattgatgatgaat 607  Q
    |||||||||||||||||| ||| |||||||||||||| ||||||  ||||| |||||||| |||||||||| || | ||||||||||    
T  16269374 ggtttagattggaatttgtaagggtttagattagatctaaaaatttgtttatattggaatttgaaaggattgatgtagatgatgaat 16269460  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 762 - 811
Target Start/End: Complemental strand, 14326389 - 14326340
Alignment:
Q  762 attagtaagtaattcaatagaaatgaatatgatcctatgttgtaagttca 811  Q
    ||||||||| ||||||||||||||||||||||||||||||||| ||||||    
T  14326389 attagtaagaaattcaatagaaatgaatatgatcctatgttgtgagttca 14326340  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 762 - 811
Target Start/End: Complemental strand, 14419399 - 14419350
Alignment:
Q  762 attagtaagtaattcaatagaaatgaatatgatcctatgttgtaagttca 811  Q
    ||||||||| ||||||||||||||||||||||||||||||||| ||||||    
T  14419399 attagtaagaaattcaatagaaatgaatatgatcctatgttgtgagttca 14419350  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 410 - 471
Target Start/End: Complemental strand, 14326718 - 14326657
Alignment:
Q  410 caaatctgattcccaaatctgattctcatttttccctttcaatccggtctaaatcagctccc 471  Q
    |||||||| | ||||||||||||||  |||||||||||| ||||||||| ||||| ||||||    
T  14326718 caaatctgctccccaaatctgattccgatttttcccttttaatccggtccaaatccgctccc 14326657  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 410 - 471
Target Start/End: Complemental strand, 14419728 - 14419667
Alignment:
Q  410 caaatctgattcccaaatctgattctcatttttccctttcaatccggtctaaatcagctccc 471  Q
    |||||||| | ||||||||||||||  |||||||||||| ||||||||| ||||| ||||||    
T  14419728 caaatctgctccccaaatctgattccgatttttcccttttaatccggtccaaatccgctccc 14419667  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 81; Significance: 1e-37; HSPs: 7)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 81; E-Value: 1e-37
Query Start/End: Original strand, 519 - 631
Target Start/End: Original strand, 39567666 - 39567778
Alignment:
Q  519 tgggtttagattggaatttgaaagtgtttagattagatccaaaaatgggtttagattggaatatgaaaggattaatattgatgatgaatgattggaattc 618  Q
    |||||||||||||| ||||| |||  |||||||||||||||||||||||||||||||||||| |||||||||| ||||||||||||||||||||| ||||    
T  39567666 tgggtttagattgggatttggaagaatttagattagatccaaaaatgggtttagattggaatttgaaaggattgatattgatgatgaatgattggcattc 39567765  T
Q  619 gaaaatgagtttt 631  Q
     ||||||||||||    
T  39567766 aaaaatgagtttt 39567778  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 77; E-Value: 3e-35
Query Start/End: Original strand, 519 - 631
Target Start/End: Original strand, 45377721 - 45377833
Alignment:
Q  519 tgggtttagattggaatttgaaagtgtttagattagatccaaaaatgggtttagattggaatatgaaaggattaatattgatgatgaatgattggaattc 618  Q
    ||||||| |||||| |||||||||  |||| |||||||||||||||| |||||||||||||| |||||||||| ||||||||||||||||||||| ||||    
T  45377721 tgggtttggattgggatttgaaagaatttaaattagatccaaaaatgagtttagattggaatttgaaaggattgatattgatgatgaatgattggcattc 45377820  T
Q  619 gaaaatgagtttt 631  Q
    |||||||||||||    
T  45377821 gaaaatgagtttt 45377833  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 76; E-Value: 1e-34
Query Start/End: Original strand, 520 - 631
Target Start/End: Original strand, 8096183 - 8096294
Alignment:
Q  520 gggtttagattggaatttgaaagtgtttagattagatccaaaaatgggtttagattggaatatgaaaggattaatattgatgatgaatgattggaattcg 619  Q
    ||||||||||||| ||||| ||| ||||||||||||||||||||||| |||||||||||||||||||||||| || ||||||||||| ||||| ||||||    
T  8096183 gggtttagattgggatttggaagagtttagattagatccaaaaatggatttagattggaatatgaaaggattgatgttgatgatgaaggattgtaattcg 8096282  T
Q  620 aaaatgagtttt 631  Q
    |||| |||||||    
T  8096283 aaaaagagtttt 8096294  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 521 - 602
Target Start/End: Complemental strand, 13366204 - 13366123
Alignment:
Q  521 ggtttagattggaatttgaaagtgtttagattagatccaaaaatgggtttagattggaatatgaaaggattaatattgatga 602  Q
    |||||||||||||||||| ||| |||||||||||||||||||||| ||||||||||||||||||||||||| || |||||||    
T  13366204 ggtttagattggaatttggaagggtttagattagatccaaaaatgagtttagattggaatatgaaaggattgatgttgatga 13366123  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 46; E-Value: 8e-17
Query Start/End: Original strand, 185 - 254
Target Start/End: Complemental strand, 13366556 - 13366487
Alignment:
Q  185 ctagaattgaattggcaaatctggaaagaacagaaggaacaaaaacaaaaacgcatgaggaaacaataca 254  Q
    ||||||||||| ||| |||||||||||||||| ||||||||| |||||||| |||| |||||||||||||    
T  13366556 ctagaattgaaatggtaaatctggaaagaacataaggaacaacaacaaaaatgcataaggaaacaataca 13366487  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 519 - 591
Target Start/End: Complemental strand, 39270267 - 39270195
Alignment:
Q  519 tgggtttagattggaatttgaaagtgtttagattagatccaaaaatgggtttagattggaatatgaaaggatt 591  Q
    |||||||||||||| ||||| |||  |||||||||||| |||||||| |||||||||||||| ||||||||||    
T  39270267 tgggtttagattgggatttggaagaatttagattagattcaaaaatgagtttagattggaatttgaaaggatt 39270195  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 185 - 226
Target Start/End: Original strand, 8095921 - 8095962
Alignment:
Q  185 ctagaattgaattggcaaatctggaaagaacagaaggaacaa 226  Q
    ||||||||||||||| ||||||||||||||||||||||||||    
T  8095921 ctagaattgaattggtaaatctggaaagaacagaaggaacaa 8095962  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 81; Significance: 1e-37; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 81; E-Value: 1e-37
Query Start/End: Original strand, 519 - 631
Target Start/End: Complemental strand, 21710036 - 21709924
Alignment:
Q  519 tgggtttagattggaatttgaaagtgtttagattagatccaaaaatgggtttagattggaatatgaaaggattaatattgatgatgaatgattggaattc 618  Q
    |||||||||||||| ||||| |||  |||||||||||||||||||||||||||||||||||| ||||||||||  |||||||||||||||||||| ||||    
T  21710036 tgggtttagattgggatttggaagaatttagattagatccaaaaatgggtttagattggaatttgaaaggattgctattgatgatgaatgattggcattc 21709937  T
Q  619 gaaaatgagtttt 631  Q
    |||||||||||||    
T  21709936 gaaaatgagtttt 21709924  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 72; E-Value: 3e-32
Query Start/End: Original strand, 522 - 625
Target Start/End: Original strand, 26025518 - 26025621
Alignment:
Q  522 gtttagattggaatttgaaagtgtttagattagatccaaaaatgggtttagattggaatatgaaaggattaatattgatgatgaatgattggaattcgaa 621  Q
    ||||||||||| ||||| |||  |||||||||||||||||||||||||||||||||||| ||||||||||  |||||||||||||||||||| |||||||    
T  26025518 gtttagattgggatttggaagaatttagattagatccaaaaatgggtttagattggaatttgaaaggattgctattgatgatgaatgattggcattcgaa 26025617  T
Q  622 aatg 625  Q
    ||||    
T  26025618 aatg 26025621  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 522 - 587
Target Start/End: Complemental strand, 33458767 - 33458702
Alignment:
Q  522 gtttagattggaatttgaaagtgtttagattagatccaaaaatgggtttagattggaatatgaaag 587  Q
    ||||| ||||||||||| ||| ||||||||||||||||||||||||||||||||||||| ||||||    
T  33458767 gtttaaattggaatttggaagagtttagattagatccaaaaatgggtttagattggaatttgaaag 33458702  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 81; Significance: 1e-37; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 81; E-Value: 1e-37
Query Start/End: Original strand, 523 - 631
Target Start/End: Complemental strand, 2972196 - 2972088
Alignment:
Q  523 tttagattggaatttgaaagtgtttagattagatccaaaaatgggtttagattggaatatgaaaggattaatattgatgatgaatgattggaattcgaaa 622  Q
    |||| ||||||||||| ||| ||||||||||||||||||||||||||||||||||| | |||||||||| || |||||||||||||||||||||||||||    
T  2972196 tttatattggaatttggaagggtttagattagatccaaaaatgggtttagattggactttgaaaggattgatgttgatgatgaatgattggaattcgaaa 2972097  T
Q  623 atgagtttt 631  Q
    |||||||||    
T  2972096 atgagtttt 2972088  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 77; E-Value: 3e-35
Query Start/End: Original strand, 519 - 631
Target Start/End: Complemental strand, 16962868 - 16962756
Alignment:
Q  519 tgggtttagattggaatttgaaagtgtttagattagatccaaaaatgggtttagattggaatatgaaaggattaatattgatgatgaatgattggaattc 618  Q
    |||||||||||||| ||||| |||  |||||||||||||||||||||||||||||||| ||| |||||||||| ||||||||||||||||||||| ||||    
T  16962868 tgggtttagattgggatttggaagaatttagattagatccaaaaatgggtttagattgaaatttgaaaggattgatattgatgatgaatgattggcattc 16962769  T
Q  619 gaaaatgagtttt 631  Q
     ||||||||||||    
T  16962768 aaaaatgagtttt 16962756  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 74; E-Value: 2e-33
Query Start/End: Original strand, 522 - 631
Target Start/End: Original strand, 51598589 - 51598698
Alignment:
Q  522 gtttagattggaatttgaaagtgtttagattagatccaaaaatgggtttagattggaatatgaaaggattaatattgatgatgaatgattggaattcgaa 621  Q
    ||||||||||| ||||| |||  |||||||||||||||||||||| ||||||||||||| ||||||||||  |||||||||||||||||||| |||||||    
T  51598589 gtttagattgggatttggaagaatttagattagatccaaaaatggatttagattggaatttgaaaggattgctattgatgatgaatgattggcattcgaa 51598688  T
Q  622 aatgagtttt 631  Q
    ||||||||||    
T  51598689 aatgagtttt 51598698  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 69; E-Value: 2e-30
Query Start/End: Original strand, 519 - 631
Target Start/End: Original strand, 40812236 - 40812348
Alignment:
Q  519 tgggtttagattggaatttgaaagtgtttagattagatccaaaaatgggtttagattggaatatgaaaggattaatattgatgatgaatgattggaattc 618  Q
    |||||||| ||||| ||||| |||  |||||||||||||||||||| ||||||||||||||| |||||||||| || |||||||||||  ||||||||||    
T  40812236 tgggtttaaattgggatttggaaggatttagattagatccaaaaataggtttagattggaatgtgaaaggattgatgttgatgatgaagaattggaattc 40812335  T
Q  619 gaaaatgagtttt 631  Q
    |||||||||||||    
T  40812336 gaaaatgagtttt 40812348  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0122 (Bit Score: 70; Significance: 4e-31; HSPs: 2)
Name: scaffold0122
Description:

Target: scaffold0122; HSP #1
Raw Score: 70; E-Value: 4e-31
Query Start/End: Original strand, 497 - 631
Target Start/End: Original strand, 16836 - 16970
Alignment:
Q  497 tgggttaatgttcatnnnnnnntgggtttagattggaatttgaaagtgtttagattagatccaaaaatgggtttagattggaatatgaaaggattaatat 596  Q
    |||||||||||||||       ||||| || ||||| ||||| ||| |||||||||| ||||||||||| ||||||||||||||||||||||||| ||||    
T  16836 tgggttaatgttcataaaaatatgggtatatattgggatttggaagggtttagattacatccaaaaatgagtttagattggaatatgaaaggattgatat 16935  T
Q  597 tgatgatgaatgattggaattcgaaaatgagtttt 631  Q
    |||||||||| ||||||||||  ||||||||||||    
T  16936 tgatgatgaaggattggaatttaaaaatgagtttt 16970  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0122; HSP #2
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 185 - 250
Target Start/End: Original strand, 16543 - 16608
Alignment:
Q  185 ctagaattgaattggcaaatctggaaagaacagaaggaacaaaaacaaaaacgcatgaggaaacaa 250  Q
    ||||||||||||||| |||||||||||||||||||||||||| ||||||||||||| |||||||||    
T  16543 ctagaattgaattggtaaatctggaaagaacagaaggaacaacaacaaaaacgcataaggaaacaa 16608  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 70; Significance: 4e-31; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 70; E-Value: 4e-31
Query Start/End: Original strand, 497 - 631
Target Start/End: Original strand, 14510130 - 14510264
Alignment:
Q  497 tgggttaatgttcatnnnnnnntgggtttagattggaatttgaaagtgtttagattagatccaaaaatgggtttagattggaatatgaaaggattaatat 596  Q
    |||||||||||||||       |||||||||||||| | ||| |||  ||||||||||||||||||||| ||||||||||||||||||||||||| || |    
T  14510130 tgggttaatgttcataaaaaaatgggtttagattgggagttggaaggatttagattagatccaaaaatgagtttagattggaatatgaaaggattgatgt 14510229  T
Q  597 tgatgatgaatgattggaattcgaaaatgagtttt 631  Q
    ||||| |||| |||||||||| |||||||||||||    
T  14510230 tgatggtgaaagattggaatttgaaaatgagtttt 14510264  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 185 - 254
Target Start/End: Original strand, 14509803 - 14509872
Alignment:
Q  185 ctagaattgaattggcaaatctggaaagaacagaaggaacaaaaacaaaaacgcatgaggaaacaataca 254  Q
    ||||||||||||||| ||||||||| |||||| ||||||||| ||||||||||||| |||||||||||||    
T  14509803 ctagaattgaattggtaaatctggagagaacaaaaggaacaacaacaaaaacgcataaggaaacaataca 14509872  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0031 (Bit Score: 68; Significance: 6e-30; HSPs: 2)
Name: scaffold0031
Description:

Target: scaffold0031; HSP #1
Raw Score: 68; E-Value: 6e-30
Query Start/End: Original strand, 522 - 625
Target Start/End: Complemental strand, 123864 - 123761
Alignment:
Q  522 gtttagattggaatttgaaagtgtttagattagatccaaaaatgggtttagattggaatatgaaaggattaatattgatgatgaatgattggaattcgaa 621  Q
    ||||||||||| ||||| |||  |||||||||||| ||||||||||||||||||||||| ||||||||||  |||||||||||||||||||| |||||||    
T  123864 gtttagattgggatttggaagaatttagattagattcaaaaatgggtttagattggaatttgaaaggattgctattgatgatgaatgattggcattcgaa 123765  T
Q  622 aatg 625  Q
    ||||    
T  123764 aatg 123761  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0031; HSP #2
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 567 - 625
Target Start/End: Complemental strand, 134690 - 134632
Alignment:
Q  567 gtttagattggaatatgaaaggattaatattgatgatgaatgattggaattcgaaaatg 625  Q
    |||||||||||||| ||||||||||  |||||||||||||||||||| |||||||||||    
T  134690 gtttagattggaatttgaaaggattgctattgatgatgaatgattggcattcgaaaatg 134632  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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