View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF18106_low_10 (Length: 385)
Name: NF18106_low_10
Description: NF18106
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18106_low_10 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 116; Significance: 6e-59; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 116; E-Value: 6e-59
Query Start/End: Original strand, 1 - 144
Target Start/End: Original strand, 10356340 - 10356482
Alignment:
| Q |
1 |
accaaaacaggacacatacatattaccaccagtcaactatcactccttactggctcccgcttcattatgttgtcattgccgcataaaagtttccaaccct |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||| |
|
|
| T |
10356340 |
accaaaacaggacacatacatattaccaccagtcaactatcactccttactggctcccgtttcattatgttgtcgttgccgcataaaagtttccaaccct |
10356439 |
T |
|
| Q |
101 |
aagcttcaaaagatgcttcttcttttttatgaatttgagatatg |
144 |
Q |
| |
|
||||||||||||||||||||| || |||| ||||||||||||| |
|
|
| T |
10356440 |
aagcttcaaaagatgcttctt-ttgtttacaaatttgagatatg |
10356482 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 67; Significance: 1e-29; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 1 - 67
Target Start/End: Complemental strand, 22008173 - 22008107
Alignment:
| Q |
1 |
accaaaacaggacacatacatattaccaccagtcaactatcactccttactggctcccgcttcatta |
67 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
22008173 |
accaaaacaggacacatacatattaccaccagtcaactatcactccttactggctcccgcttcatta |
22008107 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University