View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18106_low_12 (Length: 356)
Name: NF18106_low_12
Description: NF18106
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18106_low_12 |
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| [»] chr5 (5 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 323; Significance: 0; HSPs: 5)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 323; E-Value: 0
Query Start/End: Original strand, 17 - 356
Target Start/End: Complemental strand, 3221775 - 3221434
Alignment:
| Q |
17 |
cacactgctgctgaggctgcaggaagattcgtagaagatgcaagtgtttttggtaatgctaaaggtgttgcagctggtatggcacctaatgctcacatag |
116 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
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| T |
3221775 |
cacactgctgctgaggctgcaggaagattcgtagaagatgcaagtgtttttggtaatgctaaaggtgtagcagctggtatggcacctaatgctcacatag |
3221676 |
T |
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| Q |
117 |
caatgtacaaagtttgtactgataacattccatgcgctgaaagttctatcttagctgcaatggatattgcttttgaagatggtgtagatgttctttcact |
216 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
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| T |
3221675 |
caatgtacaaagtttgtactgataacattccatgcgctgaaagttctatcttagctgcaatggatattgctattgaagatggtgtagatgttctttcact |
3221576 |
T |
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| Q |
217 |
ttcactaggtttaggttctcttccattctttgaagacccaattgcaattggtgcttttgctgctactcaaaatggtgtttttgttagttgctctgctgca |
316 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3221575 |
ttcactaggtttaggttctcttccattctttgaagacccaattgcaattggtgcttttgctgctactcaaaatggtgtttttgttagttgctctgctgca |
3221476 |
T |
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| Q |
317 |
aactccggtcctggatacag--ctctctccaatgaagctcct |
356 |
Q |
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|||||||||||||||||||| |||||||||||||||||||| |
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| T |
3221475 |
aactccggtcctggatacagcactctctccaatgaagctcct |
3221434 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 276; E-Value: 1e-154
Query Start/End: Original strand, 16 - 356
Target Start/End: Complemental strand, 3232009 - 3231667
Alignment:
| Q |
16 |
tcacactgctgctgaggctgcaggaagattcgtagaagatgcaagtgtttttggtaatgctaaaggtgttgcagctggtatggcacctaatgctcacata |
115 |
Q |
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|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
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| T |
3232009 |
tcacactgctgcagaggctgcaggaagattcgtagaagatgcaagtgtttttggtaatgctaaaggtgtagcagctggtatggcacctaatgctcacata |
3231910 |
T |
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| Q |
116 |
gcaatgtacaaagtttgtactgataacattccatgcgctgaaagttctatcttagctgcaatggatattgcttttgaagatggtgtagatgttctttcac |
215 |
Q |
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|||||||||||||||||| ||||||||||| |||| |||||||||| ||||||||||||| ||||| ||| ||||||||||||||||||||||||||| |
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| T |
3231909 |
gcaatgtacaaagtttgtgatgataacattcgatgctttgaaagttctgtcttagctgcaatagatatagctattgaagatggtgtagatgttctttcac |
3231810 |
T |
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| Q |
216 |
tttcactaggtttaggttctcttccattctttgaagacccaattgcaattggtgcttttgctgctactcaaaatggtgtttttgttagttgctctgctgc |
315 |
Q |
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||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3231809 |
tttcacttggtttaggttctcttccattctttgaagacccaattgcaattggtgcttttgctgctactcaaaatggtgtttttgttagttgctctgctgc |
3231710 |
T |
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| Q |
316 |
aaactccggtcctggatacag--ctctctccaatgaagctcct |
356 |
Q |
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|||||| |||||||||||||| |||| ||||||||||||||| |
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| T |
3231709 |
aaactctggtcctggatacagcactctttccaatgaagctcct |
3231667 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 235; E-Value: 1e-130
Query Start/End: Original strand, 17 - 356
Target Start/End: Complemental strand, 3226757 - 3226416
Alignment:
| Q |
17 |
cacactgctgctgaggctgcaggaagattcgtagaagatgcaagtgtttttggtaatgctaaaggtgttgcagctggtatggcacctaatgctcacatag |
116 |
Q |
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||||| ||||| |||||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||| || |||||||||||||| ||| ||| |
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| T |
3226757 |
cacaccgctgccgaggctgcaggaagattcatagaagatgcaagtgtttttggtaatgctaaaggtgtagcagcaggaatggcacctaatgcccacttag |
3226658 |
T |
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| Q |
117 |
caatgtacaaagtttgtactgataacattccatgcgctgaaagttctatcttagctgcaatggatattgcttttgaagatggtgtagatgttctttcact |
216 |
Q |
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|||| |||||||| |||| ||| || ||| |||| |||||||| |||||||||||||||||||||||||| | |||||||||||||||||||||||||| |
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| T |
3226657 |
caatatacaaagtgtgtaatgacaaaattggatgcactgaaagtgctatcttagctgcaatggatattgctatcgaagatggtgtagatgttctttcact |
3226558 |
T |
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| Q |
217 |
ttcactaggtttaggttctcttccattctttgaagacccaattgcaattggtgcttttgctgctactcaaaatggtgtttttgttagttgctctgctgca |
316 |
Q |
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|||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
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| T |
3226557 |
ttcacttggtttaggttcccttccattctttgaagacccaattgcaattggtgcttttgctgcaactcaaaatggtgtttttgttagttgctctgctgca |
3226458 |
T |
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| Q |
317 |
aactccggtcctggatacag--ctctctccaatgaagctcct |
356 |
Q |
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||||| ||||||||||| || |||||||||||||||||||| |
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| T |
3226457 |
aactctggtcctggatatagcactctctccaatgaagctcct |
3226416 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 227; E-Value: 1e-125
Query Start/End: Original strand, 17 - 356
Target Start/End: Complemental strand, 3240807 - 3240466
Alignment:
| Q |
17 |
cacactgctgctgaggctgcaggaagattcgtagaagatgcaagtgtttttggtaatgctaaaggtgttgcagctggtatggcacctaatgctcacatag |
116 |
Q |
| |
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||||||||||| |||||||||||||||||| || |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||| |
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| T |
3240807 |
cacactgctgcggaggctgcaggaagattcataaaagatgcaagtgtttttggtaatgctaaaggtgtagcagctggtatggcacctaatgctcacttag |
3240708 |
T |
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| Q |
117 |
caatgtacaaagtttgtactgataacattccatgcgctgaaagttctatcttagctgcaatggatattgcttttgaagatggtgtagatgttctttcact |
216 |
Q |
| |
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|||| |||||||| || | |||||| || |||| | |||||| |||||||||||||||||||||| ||| |||||||||||||||||||||| ||||| |
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| T |
3240707 |
caatatacaaagtgtgcaatgataaaatagaatgccccgaaagtgctatcttagctgcaatggatatagctattgaagatggtgtagatgttctgtcact |
3240608 |
T |
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| Q |
217 |
ttcactaggtttaggttctcttccattctttgaagacccaattgcaattggtgcttttgctgctactcaaaatggtgtttttgttagttgctctgctgca |
316 |
Q |
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|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |||||||| ||| |
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| T |
3240607 |
ttcacttggtttaggttctcttccattctttgaagacccaattgcaattggtgcttttgctgctactcaaaatggtatttttgttagctgctctgccgca |
3240508 |
T |
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| Q |
317 |
aactccggtcctggatacag--ctctctccaatgaagctcct |
356 |
Q |
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||||| || |||| |||||| |||||||||||||||||||| |
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| T |
3240507 |
aactctggccctgaatacagcactctctccaatgaagctcct |
3240466 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 219; E-Value: 1e-120
Query Start/End: Original strand, 17 - 356
Target Start/End: Original strand, 3178033 - 3178374
Alignment:
| Q |
17 |
cacactgctgctgaggctgcaggaagattcgtagaagatgcaagtgtttttggtaatgctaaaggtgttgcagctggtatggcacctaatgctcacatag |
116 |
Q |
| |
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||||||||||| |||||||||||||||||| || |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||| |
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| T |
3178033 |
cacactgctgcggaggctgcaggaagattcataaaagatgcaagtgtttttggtaatgctaaaggtgtagcagctggtatggcacctaatgctcacttag |
3178132 |
T |
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| Q |
117 |
caatgtacaaagtttgtactgataacattccatgcgctgaaagttctatcttagctgcaatggatattgcttttgaagatggtgtagatgttctttcact |
216 |
Q |
| |
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|||| |||||||| || | |||||| || |||| | |||||| |||||||||||||||||||||| ||| |||||||||||||||||||||| ||||| |
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| T |
3178133 |
caatatacaaagtgtgcaatgataaaatagaatgccccgaaagtgctatcttagctgcaatggatatagctattgaagatggtgtagatgttctgtcact |
3178232 |
T |
|
| Q |
217 |
ttcactaggtttaggttctcttccattctttgaagacccaattgcaattggtgcttttgctgctactcaaaatggtgtttttgttagttgctctgctgca |
316 |
Q |
| |
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|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |||||||| | | |
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| T |
3178233 |
ttcacttggtttaggttctcttccattctttgaagacccaattgcaattggtgcttttgctgctactaaaaatggtgtttttgttagctgctctgccgga |
3178332 |
T |
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| Q |
317 |
aactccggtcctggatacag--ctctctccaatgaagctcct |
356 |
Q |
| |
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||||| || |||| |||||| ||||||| |||||||||||| |
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| T |
3178333 |
aactctggccctgaatacagcactctctcgaatgaagctcct |
3178374 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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