View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18106_low_13 (Length: 339)
Name: NF18106_low_13
Description: NF18106
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18106_low_13 |
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Alignment Details
Target: chr6 (Bit Score: 260; Significance: 1e-145; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 260; E-Value: 1e-145
Query Start/End: Original strand, 18 - 324
Target Start/End: Original strand, 3822698 - 3823001
Alignment:
| Q |
18 |
aatgtcgttagtatgaaaagacacataagtatagttcgtactagacattaaaagaaaaggcttatcaagtctaaaaaggttgatgaccgataataagtcg |
117 |
Q |
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| T |
3822698 |
aatgtagttagtatgaaaagacacataagtatagttcgtactagacattaaaagaaaaggcttatcaagtctaaaaaggttgatgaccgataataagtcg |
3822797 |
T |
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| Q |
118 |
aacttgtgtcttggattgctttgaatattccaattctatatatccatgcaaaacttactcaatctagcatatatttacccctaatcggtataaggtaaca |
217 |
Q |
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| T |
3822798 |
aacttgtgtcttggattgctttgaatattccaattctatatatccatgcaaaacttactcaatctagcatatatttacccgtaatcggtataaggtaaca |
3822897 |
T |
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| Q |
218 |
aaatttgggtgttcatacttcttcatcatactattaaggtaaannnnnnnatcaatcgattaaatgatgctaatggatggtgttttttcaagctagcata |
317 |
Q |
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| T |
3822898 |
aaatttgggtgttcatacttct---tcatactattaaagtaaaaaaaattatcaatcgattaaatgatgctaatggatggtgttttttcaagctagcata |
3822994 |
T |
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| Q |
318 |
tatttac |
324 |
Q |
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| T |
3822995 |
tatttac |
3823001 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 99; E-Value: 8e-49
Query Start/End: Original strand, 67 - 236
Target Start/End: Original strand, 3821166 - 3821335
Alignment:
| Q |
67 |
aaaagaaaaggcttatcaagtctaaaaaggttgatgaccgataataagtcgaacttgtgtcttggattgctttgaatattccaattctatatatccatgc |
166 |
Q |
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|||| |||||| ||||||||||||| ||||||||||||||||||| ||||||||||||||||| ||||||||||| || |||| ||||||||||||||| |
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| T |
3821166 |
aaaaaaaaaggtatatcaagtctaaagaggttgatgaccgataataggtcgaacttgtgtcttgcattgctttgaacatgccaagtctatatatccatgc |
3821265 |
T |
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| Q |
167 |
aaaacttac-tcaatctagcatatatttacccctaatcggtataaggtaacaaaatttgggtgttcatact |
236 |
Q |
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| T |
3821266 |
aaaacttgcatcaatctagcatat-tttcaccctaatcggtataagctaacaaaagttgggtgttcatact |
3821335 |
T |
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