View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18106_low_17 (Length: 270)
Name: NF18106_low_17
Description: NF18106
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18106_low_17 |
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| [»] chr5 (2 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 219; Significance: 1e-120; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 219; E-Value: 1e-120
Query Start/End: Original strand, 48 - 270
Target Start/End: Original strand, 2908315 - 2908537
Alignment:
| Q |
48 |
caactccaaatagtaaaatcttcaaattctattgtaaaacatatattggaatatgatcacaaaagtgtactcacacaatgaggagagaaaaaccatttta |
147 |
Q |
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| T |
2908315 |
caactccaaatagtaaaatcttcaaattctgttgtaaaacatatattggaatatgatcacaaaagtgtactcacacaatgaggagagaaaaaccatttta |
2908414 |
T |
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| Q |
148 |
accatatttccccaaatcagagaatccaaacaaaattttgtgattgtcttgtttagtttctagaacccaagtaagacccaatggtcatcttaatttttaa |
247 |
Q |
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| T |
2908415 |
accatatttccccaaatcagagaatccaaacaaaattttgtgattgtcttgtttagtttctagaacccaagtaagacccaatggtcatcttaatttttaa |
2908514 |
T |
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| Q |
248 |
atcgaataatctcattaaagata |
270 |
Q |
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| T |
2908515 |
atcgaataatctcattaaagata |
2908537 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 19 - 48
Target Start/End: Original strand, 2908250 - 2908279
Alignment:
| Q |
19 |
gatgtttccttaccaaatccttagcatgtc |
48 |
Q |
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| T |
2908250 |
gatgtttccttaccaaatccttagcatgtc |
2908279 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 55 - 111
Target Start/End: Original strand, 766195 - 766251
Alignment:
| Q |
55 |
aaatagtaaaatcttcaaattctattgtaaaacatatattggaatatgatcacaaaa |
111 |
Q |
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| T |
766195 |
aaatagtaagatcttcaaattccatggtaaaacatatagtggaatatgatcacaaaa |
766251 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 55 - 111
Target Start/End: Original strand, 7409505 - 7409561
Alignment:
| Q |
55 |
aaatagtaaaatcttcaaattctattgtaaaacatatattggaatatgatcacaaaa |
111 |
Q |
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| T |
7409505 |
aaatagtaagatctccaaattccatgataaaacatatagtggaatatgatcacaaaa |
7409561 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 55 - 142
Target Start/End: Original strand, 36738268 - 36738355
Alignment:
| Q |
55 |
aaatagtaaaatcttcaaattctattgtaaaacatatattggaatatgatcacaaaagtgtactcacacaatgaggagagaaaaacca |
142 |
Q |
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||||||||| ||||||||| | || |||||||||||| | | | ||||||||| ||||| ||| |||||||||||||||||||||| |
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| T |
36738268 |
aaatagtaagatcttcaaaattcatgataaaacatatatcgtagtgtgatcacaacagtgtcctctcacaatgaggagagaaaaacca |
36738355 |
T |
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