View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18106_low_18 (Length: 254)

Name: NF18106_low_18
Description: NF18106
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18106_low_18
NF18106_low_18
[»] chr5 (6 HSPs)
chr5 (24-233)||(18263498-18263708)
chr5 (65-240)||(23275919-23276093)
chr5 (146-212)||(34017431-34017497)
chr5 (168-212)||(20887699-20887743)
chr5 (168-212)||(29195859-29195903)
chr5 (168-212)||(32910648-32910692)
[»] chr7 (9 HSPs)
chr7 (17-147)||(5587024-5587154)
chr7 (17-147)||(5591985-5592115)
chr7 (144-212)||(23941382-23941450)
chr7 (96-200)||(24824603-24824709)
chr7 (106-245)||(12868614-12868754)
chr7 (184-240)||(2834739-2834795)
chr7 (168-212)||(2369690-2369734)
chr7 (168-212)||(44222072-44222116)
chr7 (144-212)||(4278641-4278710)
[»] chr4 (11 HSPs)
chr4 (86-254)||(54253611-54253780)
chr4 (89-250)||(24904244-24904415)
chr4 (168-213)||(12586466-12586511)
chr4 (168-212)||(33990825-33990869)
chr4 (168-212)||(43210024-43210068)
chr4 (168-212)||(50008829-50008873)
chr4 (168-212)||(12656585-12656629)
chr4 (168-212)||(22182173-22182217)
chr4 (168-212)||(24972670-24972714)
chr4 (168-212)||(50336224-50336268)
chr4 (168-212)||(55524006-55524050)
[»] chr6 (2 HSPs)
chr6 (86-187)||(8355846-8355947)
chr6 (89-236)||(2293364-2293508)
[»] chr8 (8 HSPs)
chr8 (88-254)||(21402752-21402919)
chr8 (88-254)||(21797245-21797412)
chr8 (102-243)||(18328622-18328764)
chr8 (106-245)||(14189782-14189922)
chr8 (168-212)||(24626065-24626109)
chr8 (86-138)||(43094034-43094086)
chr8 (168-245)||(32075088-32075165)
chr8 (168-212)||(34276472-34276516)
[»] chr3 (9 HSPs)
chr3 (86-187)||(51410226-51410328)
chr3 (106-212)||(14443752-14443857)
chr3 (168-212)||(53767287-53767331)
chr3 (168-212)||(20518081-20518125)
chr3 (168-212)||(30933827-30933871)
chr3 (168-212)||(54335717-54335761)
chr3 (168-212)||(7666721-7666765)
chr3 (168-212)||(11916993-11917037)
chr3 (168-212)||(35995367-35995411)
[»] chr2 (8 HSPs)
chr2 (161-250)||(12892374-12892463)
chr2 (101-141)||(12892467-12892507)
chr2 (169-212)||(22787807-22787850)
chr2 (155-240)||(19987774-19987859)
chr2 (168-245)||(20927504-20927581)
chr2 (168-212)||(9829376-9829420)
chr2 (34-240)||(10331661-10331867)
chr2 (168-212)||(8277215-8277259)
[»] chr1 (3 HSPs)
chr1 (169-254)||(18426355-18426440)
chr1 (143-212)||(16315159-16315229)
chr1 (168-212)||(23941698-23941742)
[»] scaffold1063 (1 HSPs)
scaffold1063 (168-212)||(1706-1750)
[»] scaffold0599 (1 HSPs)
scaffold0599 (168-212)||(8744-8788)
[»] scaffold0037 (1 HSPs)
scaffold0037 (168-212)||(38141-38185)


Alignment Details
Target: chr5 (Bit Score: 127; Significance: 1e-65; HSPs: 6)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 127; E-Value: 1e-65
Query Start/End: Original strand, 24 - 233
Target Start/End: Complemental strand, 18263708 - 18263498
Alignment:
Q  24 aaagccaacatgagttaactcatattgcgatgcattacctgttttaggccatttctagcacatccacacttcaaacacacacttctttccctcttcacct 123  Q
    ||||||||| ||||||||||||  |||||||||||||||||||| ||||||||   ||||| ||||||||||||||||||||||||||||||||| ||||    
T  18263708 aaagccaacgtgagttaactcacgttgcgatgcattacctgtttaaggccattctcagcacctccacacttcaaacacacacttctttccctctttacct 18263609  T
Q  124 ccaaaacacccaaaagtatgattttttggtg-aaaatcttgagctcaaatcattggaaatcgtcatgaagtaagtttctacgctcatcaaaagtctagaa 222  Q
     ||||||||||||||||| | | |||||||| |||||||  ||||||||||||||||||||||||  ||||||||||||||||||||||||  |||||||    
T  18263608 acaaaacacccaaaagtacgctattttggtgaaaaatctcaagctcaaatcattggaaatcgtcaataagtaagtttctacgctcatcaaagatctagaa 18263509  T
Q  223 tcaggtaatgc 233  Q
    |||||||||||    
T  18263508 tcaggtaatgc 18263498  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 65 - 240
Target Start/End: Original strand, 23275919 - 23276093
Alignment:
Q  65 ttttaggccatttctagcacatccacacttcaaacacacacttctttccctcttcacctccaaaacacccaaaagtatgattttttggtg-aaaatcttg 163  Q
    |||||||||||  || | || ||||||||||||||||||||| | |||||||||||||| ||||  |    |||||   |  |||||||| ||||  |||    
T  23275919 ttttaggccatcacttgtacctccacacttcaaacacacactcccttccctcttcacctacaaa--aattgaaagtgcaaaattttggtgcaaaagtttg 23276016  T
Q  164 agctcaaatcattggaaatcgtcatgaagtaagtttctacgctcatcaaaagtctagaatcaggtaatgcatcatct 240  Q
    |||||||||||||||||| ||| | |||| |||||||||| ||||| ||| ||| | ||| | |||||| |||||||    
T  23276017 agctcaaatcattggaaaacgttaggaagcaagtttctacactcataaaacgtcaaaaattatgtaatgtatcatct 23276093  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 146 - 212
Target Start/End: Complemental strand, 34017497 - 34017431
Alignment:
Q  146 tttttggtgaaaatcttgagctcaaatcattggaaatcgtcatgaagtaagtttctacgctcatcaa 212  Q
    |||| ||| |||||||| |  ||||||||||| ||||||||| |||  |||||||||||||||||||    
T  34017497 ttttgggtaaaaatcttcatttcaaatcattgcaaatcgtcaggaaacaagtttctacgctcatcaa 34017431  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 168 - 212
Target Start/End: Complemental strand, 20887743 - 20887699
Alignment:
Q  168 caaatcattggaaatcgtcatgaagtaagtttctacgctcatcaa 212  Q
    |||||||||| ||||||||| |||| ||||||||||||| |||||    
T  20887743 caaatcattgcaaatcgtcaggaagaaagtttctacgcttatcaa 20887699  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 168 - 212
Target Start/End: Complemental strand, 29195903 - 29195859
Alignment:
Q  168 caaatcattggaaatcgtcatgaagtaagtttctacgctcatcaa 212  Q
    |||||||||| |||||||||  ||| |||||||||||||||||||    
T  29195903 caaatcattgcaaatcgtcagaaagcaagtttctacgctcatcaa 29195859  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 168 - 212
Target Start/End: Original strand, 32910648 - 32910692
Alignment:
Q  168 caaatcattggaaatcgtcatgaagtaagtttctacgctcatcaa 212  Q
    |||| ||||| |||||||||||||| |||||||||| ||||||||    
T  32910648 caaaccattgcaaatcgtcatgaagcaagtttctacactcatcaa 32910692  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 87; Significance: 8e-42; HSPs: 9)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 87; E-Value: 8e-42
Query Start/End: Original strand, 17 - 147
Target Start/End: Complemental strand, 5587154 - 5587024
Alignment:
Q  17 taggtataaagccaacatgagttaactcatattgcgatgcattacctgttttaggccatttctagcacatccacacttcaaacacacacttctttccctc 116  Q
    |||||||||||||||| ||||||||||||  |||||||||||||| |||||||||| |||   ||||| |||||||||||||||||||||||||||||||    
T  5587154 taggtataaagccaacgtgagttaactcacgttgcgatgcattacttgttttaggcaattctcagcacctccacacttcaaacacacacttctttccctc 5587055  T
Q  117 ttcacctccaaaacacccaaaagtatgattt 147  Q
    |||||||||||||| |||||||||| |||||    
T  5587054 ttcacctccaaaacgcccaaaagtacgattt 5587024  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 87; E-Value: 8e-42
Query Start/End: Original strand, 17 - 147
Target Start/End: Complemental strand, 5592115 - 5591985
Alignment:
Q  17 taggtataaagccaacatgagttaactcatattgcgatgcattacctgttttaggccatttctagcacatccacacttcaaacacacacttctttccctc 116  Q
    |||||||||||||||| ||||||||||||  |||||||||||||| |||||||||| |||   ||||| |||||||||||||||||||||||||||||||    
T  5592115 taggtataaagccaacgtgagttaactcacgttgcgatgcattacttgttttaggcaattctcagcacctccacacttcaaacacacacttctttccctc 5592016  T
Q  117 ttcacctccaaaacacccaaaagtatgattt 147  Q
    |||||||||||||| |||||||||| |||||    
T  5592015 ttcacctccaaaacgcccaaaagtacgattt 5591985  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 144 - 212
Target Start/End: Original strand, 23941382 - 23941450
Alignment:
Q  144 attttttggtgaaaatcttgagctcaaatcattggaaatcgtcatgaagtaagtttctacgctcatcaa 212  Q
    |||||||||| |||||| | | | |||||||||| |||||||||||||| |||||||||||||||||||    
T  23941382 attttttggtcaaaatcctcatcccaaatcattgcaaatcgtcatgaagcaagtttctacgctcatcaa 23941450  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 96 - 200
Target Start/End: Original strand, 24824603 - 24824709
Alignment:
Q  96 aaacacacacttctttccctcttcacctccaaaacacccaaaagtatgattttttggt--gaaaatcttgagctcaaatcattggaaatcgtcatgaagt 193  Q
    |||||||||||| |||||||||||| ||||||||||||||||||  ||| |||| | |   |||| |||| ||||||||||||||||| |||||  |||     
T  24824603 aaacacacacttttttccctcttcatctccaaaacacccaaaagagtgaattttcgataaaaaaagcttgggctcaaatcattggaaaacgtcagaaagc 24824702  T
Q  194 aagtttc 200  Q
    |||||||    
T  24824703 aagtttc 24824709  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 106 - 245
Target Start/End: Original strand, 12868614 - 12868754
Alignment:
Q  106 ttctttccctcttcacctccaaaacacccaaaagt--atgattttttggtgaaaatcttgagctcaaatcattggaaatcgtcatgaagtaagtttctac 203  Q
    |||||||| ||||||||||||||| ||||||||||  |   ||||||||| |||||||| |  ||||||||||  ||||||| | |||||||||||||||    
T  12868614 ttctttccttcttcacctccaaaa-acccaaaagtgcaaatttttttggtcaaaatcttcatttcaaatcattacaaatcgtgaggaagtaagtttctac 12868712  T
Q  204 gctcatcaaaagtctagaatcaggtaatgcatcatcttaact 245  Q
     ||||||||   |  | |||||| ||||| ||||||||||||    
T  12868713 actcatcaagcataaaaaatcagataatgtatcatcttaact 12868754  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 184 - 240
Target Start/End: Original strand, 2834739 - 2834795
Alignment:
Q  184 gtcatgaagtaagtttctacgctcatcaaaagtctagaatcaggtaatgcatcatct 240  Q
    ||||||||| |||||||||||||||||||| ||| | |||||||||||| |||||||    
T  2834739 gtcatgaagcaagtttctacgctcatcaaacgtcaaaaatcaggtaatgtatcatct 2834795  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 168 - 212
Target Start/End: Complemental strand, 2369734 - 2369690
Alignment:
Q  168 caaatcattggaaatcgtcatgaagtaagtttctacgctcatcaa 212  Q
    |||||||||| |||||||||||||| |||||||||| ||||||||    
T  2369734 caaatcattgcaaatcgtcatgaagcaagtttctacactcatcaa 2369690  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 168 - 212
Target Start/End: Original strand, 44222072 - 44222116
Alignment:
Q  168 caaatcattggaaatcgtcatgaagtaagtttctacgctcatcaa 212  Q
    |||||||||| ||||||||| |||| |||||||||||||||||||    
T  44222072 caaatcattgcaaatcgtcaggaagcaagtttctacgctcatcaa 44222116  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 144 - 212
Target Start/End: Original strand, 4278641 - 4278710
Alignment:
Q  144 attttttggtgaaaatcttgagctcaaatcattggaaatcgtcatgaa-gtaagtttctacgctcatcaa 212  Q
    |||||||||| |||||| | | | |||||||||| | ||||||| ||| |||||||||||||||||||||    
T  4278641 attttttggtcaaaatcctcatcccaaatcattgcacatcgtcaggaaagtaagtttctacgctcatcaa 4278710  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 78; Significance: 2e-36; HSPs: 11)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 86 - 254
Target Start/End: Original strand, 54253611 - 54253780
Alignment:
Q  86 tccacacttcaaacacacacttctttccctcttcacctccaaaacacccaaaagtatgattttttggtga-aaatcttgagctcaaatcattggaaatcg 184  Q
    |||||||||||||||||||||||||| ||||||||||||||||||||||||||||  ||   |||||||| |||   |||||||||||||||| ||| |     
T  54253611 tccacacttcaaacacacacttcttttcctcttcacctccaaaacacccaaaagtgcgaaaatttggtgagaaagtatgagctcaaatcattgaaaaaca 54253710  T
Q  185 tcatgaagtaagtttctacgctcatcaaaagtctagaatcaggtaatgcatcatcttaactatttacatt 254  Q
    |||||||  ||||||||||  |||||||| ||| | ||||||| ||||||||||||| ||||||||||||    
T  54253711 tcatgaaacaagtttctacattcatcaaacgtcaaaaatcaggcaatgcatcatcttgactatttacatt 54253780  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 89 - 250
Target Start/End: Complemental strand, 24904415 - 24904244
Alignment:
Q  89 acacttcaaacacacacttctttccctcttcacctccaaaacacccaaaagtatgattttttggtgaaaat----------cttgagctcaaatcattgg 178  Q
    |||||||||||||||| || ||||||||||||||||||||||| ||| |||| ||| |||||||| ||||           |||||||||||||||||      
T  24904415 acacttcaaacacacaattatttccctcttcacctccaaaacatccacaagtgtgaatttttggtaaaaaaaaaaaaaaagcttgagctcaaatcattaa 24904316  T
Q  179 aaatcgtcatgaagtaagtttctacgctcatcaaaagtctagaatcaggtaatgcatcatcttaactattta 250  Q
    ||| | |||||||| |||||||||||||||||||| ||| | ||||| ||||||  |||||||| |||||||    
T  24904315 aaaacatcatgaagcaagtttctacgctcatcaaacgtcaaaaatcaagtaatgtgtcatcttacctattta 24904244  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 168 - 213
Target Start/End: Original strand, 12586466 - 12586511
Alignment:
Q  168 caaatcattggaaatcgtcatgaagtaagtttctacgctcatcaaa 213  Q
    |||||||||| ||||||||| ||| |||||||||||||||||||||    
T  12586466 caaatcattgcaaatcgtcaggaaataagtttctacgctcatcaaa 12586511  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 168 - 212
Target Start/End: Original strand, 33990825 - 33990869
Alignment:
Q  168 caaatcattggaaatcgtcatgaagtaagtttctacgctcatcaa 212  Q
    |||||||||| |||||||||||||  |||||||||||||||||||    
T  33990825 caaatcattgcaaatcgtcatgaatcaagtttctacgctcatcaa 33990869  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 168 - 212
Target Start/End: Complemental strand, 43210068 - 43210024
Alignment:
Q  168 caaatcattggaaatcgtcatgaagtaagtttctacgctcatcaa 212  Q
    |||||||||| ||||||||| |||| |||||||||||||||||||    
T  43210068 caaatcattgcaaatcgtcaggaagcaagtttctacgctcatcaa 43210024  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 168 - 212
Target Start/End: Complemental strand, 50008873 - 50008829
Alignment:
Q  168 caaatcattggaaatcgtcatgaagtaagtttctacgctcatcaa 212  Q
    |||||||||| ||||||||| |||| |||||||||||||||||||    
T  50008873 caaatcattgcaaatcgtcaggaagcaagtttctacgctcatcaa 50008829  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 168 - 212
Target Start/End: Original strand, 12656585 - 12656629
Alignment:
Q  168 caaatcattggaaatcgtcatgaagtaagtttctacgctcatcaa 212  Q
    |||||||||| |||||||||  ||| |||||||||||||||||||    
T  12656585 caaatcattgcaaatcgtcagaaagcaagtttctacgctcatcaa 12656629  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 168 - 212
Target Start/End: Complemental strand, 22182217 - 22182173
Alignment:
Q  168 caaatcattggaaatcgtcatgaagtaagtttctacgctcatcaa 212  Q
    |||||||||| ||||||| | |||| |||||||||||||||||||    
T  22182217 caaatcattgcaaatcgttaagaagcaagtttctacgctcatcaa 22182173  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 168 - 212
Target Start/End: Original strand, 24972670 - 24972714
Alignment:
Q  168 caaatcattggaaatcgtcatgaagtaagtttctacgctcatcaa 212  Q
    |||||||||| ||||||||| |||  |||||||||||||||||||    
T  24972670 caaatcattgcaaatcgtcaggaaacaagtttctacgctcatcaa 24972714  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 168 - 212
Target Start/End: Complemental strand, 50336268 - 50336224
Alignment:
Q  168 caaatcattggaaatcgtcatgaagtaagtttctacgctcatcaa 212  Q
    |||| ||||| |||||||||||||| ||||||||| |||||||||    
T  50336268 caaaccattgcaaatcgtcatgaagcaagtttctatgctcatcaa 50336224  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 168 - 212
Target Start/End: Original strand, 55524006 - 55524050
Alignment:
Q  168 caaatcattggaaatcgtcatgaagtaagtttctacgctcatcaa 212  Q
    |||||||||| ||||||||| |||  |||||||||||||||||||    
T  55524006 caaatcattgtaaatcgtcaggaaacaagtttctacgctcatcaa 55524050  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 74; Significance: 5e-34; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 86 - 187
Target Start/End: Original strand, 8355846 - 8355947
Alignment:
Q  86 tccacacttcaaacacacacttctttccctcttcacctccaaaacacccaaaagtatgattttttggtgaaaatcttgagctcaaatcattggaaatcgt 185  Q
    ||||||||||||||||||| || ||||||||||||||||||||| |||||||||| ||| ||||| |||||||||||||||| |||||||||||||||||    
T  8355846 tccacacttcaaacacacatttttttccctcttcacctccaaaatacccaaaagtgtgaattttttgtgaaaatcttgagctaaaatcattggaaatcgt 8355945  T
Q  186 ca 187  Q
    ||    
T  8355946 ca 8355947  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 89 - 236
Target Start/End: Complemental strand, 2293508 - 2293364
Alignment:
Q  89 acacttcaaacacacacttctttccctcttcacctccaaaacacccaaaagtatgattttttggtg-aaaatcttgagctcaaatcattggaaatcgtca 187  Q
    |||||| || ||||||||| |||||||||||||||||||||||||||||| || || ||||||||| ||||  ||| | |||||||||| ||||  |||     
T  2293508 acactttaatcacacacttatttccctcttcacctccaaaacacccaaaaata-gagtttttggtgaaaaagtttgggatcaaatcattagaaaatgtc- 2293411  T
Q  188 tgaagtaagtttctacgctcatcaaaagtctagaatcaggtaatgcatc 236  Q
      |||  | |||||||||| |||||| ||| | ||||||||||||||||    
T  2293410 --aagcgaatttctacgctaatcaaatgtcaaaaatcaggtaatgcatc 2293364  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 64; Significance: 4e-28; HSPs: 8)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 88 - 254
Target Start/End: Complemental strand, 21402919 - 21402752
Alignment:
Q  88 cacacttcaaacacacacttctttccctcttcacctccaaaacacccaaaagtatgattttttggtg-aaaatcttgagctcaaatcattggaaatcgtc 186  Q
    ||||||||||||||||||||  ||||||||||||||||||||||||| |||||  || ||| ||||| |||| || |||||||||||||||||||| |||    
T  21402919 cacacttcaaacacacacttaattccctcttcacctccaaaacaccctaaagtgcgaatttgtggtgaaaaagctcgagctcaaatcattggaaattgtc 21402820  T
Q  187 atgaagtaagtttctacgctcatcaaaagtctagaatcaggtaatgcatcatcttaactatttacatt 254  Q
    | |||  |||||| |||||| || ||| ||| | ||| |||| ||||||||||  | |||||||||||    
T  21402819 aggaaacaagtttatacgcttattaaacgtcaaaaattaggtcatgcatcatccaagctatttacatt 21402752  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 88 - 254
Target Start/End: Complemental strand, 21797412 - 21797245
Alignment:
Q  88 cacacttcaaacacacacttctttccctcttcacctccaaaacacccaaaagtatgattttttggtg-aaaatcttgagctcaaatcattggaaatcgtc 186  Q
    ||||||||||||||||||||  ||||||||||||||||||||||||| |||||  || ||| ||||| |||| || |||||||||||||||||||| |||    
T  21797412 cacacttcaaacacacacttaattccctcttcacctccaaaacaccctaaagtgcgaatttgtggtgaaaaagctcgagctcaaatcattggaaattgtc 21797313  T
Q  187 atgaagtaagtttctacgctcatcaaaagtctagaatcaggtaatgcatcatcttaactatttacatt 254  Q
    | |||  |||||| |||||| || ||| ||| | ||| |||| ||||||||||  | |||||||||||    
T  21797312 aggaaacaagtttatacgcttattaaacgtcaaaaattaggtcatgcatcatccaagctatttacatt 21797245  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 102 - 243
Target Start/End: Complemental strand, 18328764 - 18328622
Alignment:
Q  102 acacttctttccctcttcacctccaaaacacccaaaagtatgattttttggtg-aaaatcttgagctcaaatcattggaaatcgtcatgaagtaagtttc 200  Q
    |||||||||||||||||||||||||||| | ||||||||  || ||||||||| ||||  |||||||||||||||| |||||||||| |||| ||||||     
T  18328764 acacttctttccctcttcacctccaaaatatccaaaagtgcgaatttttggtgaaaaagtttgagctcaaatcattagaaatcgtcacgaagcaagttta 18328665  T
Q  201 tacgctcatcaaaagtctagaatcaggtaatgcatcatcttaa 243  Q
    |||| |||| ||| ||  | ||| ||||||| |||||||||||    
T  18328664 tacgttcattaaacgtaaaaaataaggtaatacatcatcttaa 18328622  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 106 - 245
Target Start/End: Original strand, 14189782 - 14189922
Alignment:
Q  106 ttctttccctcttcacctccaaaacacccaaaagtatgattttttgg-tgaaaatcttgagctcaaatcattggaaatcgtcatgaagtaagtttctacg 204  Q
    |||||||||||   ||||||||||   | |||||| ||||||||||| | |||||||| |  ||||||||||| ||||||| | |||| ||||| |||||    
T  14189782 ttctttccctccctacctccaaaatctcaaaaagtgtgattttttgggtcaaaatcttcatttcaaatcattgcaaatcgttaggaagaaagttactacg 14189881  T
Q  205 ctcatcaaaagtctagaatcaggtaatgcatcatcttaact 245  Q
    ||||||||   |  | |||||||||||  ||||||||||||    
T  14189882 ctcatcaagcataaaaaatcaggtaatatatcatcttaact 14189922  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 168 - 212
Target Start/End: Complemental strand, 24626109 - 24626065
Alignment:
Q  168 caaatcattggaaatcgtcatgaagtaagtttctacgctcatcaa 212  Q
    |||||||||| ||||| |||||||| |||||||||||||||||||    
T  24626109 caaatcattgcaaatcatcatgaagcaagtttctacgctcatcaa 24626065  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 86 - 138
Target Start/End: Complemental strand, 43094086 - 43094034
Alignment:
Q  86 tccacacttcaaacacacacttctttccctcttcacctccaaaacacccaaaa 138  Q
    ||||||| |||||||||||||| ||||| |||| |||||||||||||| ||||    
T  43094086 tccacacctcaaacacacacttatttccatcttaacctccaaaacacctaaaa 43094034  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 168 - 245
Target Start/End: Original strand, 32075088 - 32075165
Alignment:
Q  168 caaatcattggaaatcgtcatgaagtaagtttctacgctcatcaaaagtctagaatcaggtaatgcatcatcttaact 245  Q
    |||||||||| ||||| ||| |||| |||||||||||||||||||   || |  ||||||||||| ||||||| ||||    
T  32075088 caaatcattgtaaatcatcaggaagcaagtttctacgctcatcaagcatcaaatatcaggtaatgtatcatctaaact 32075165  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 168 - 212
Target Start/End: Original strand, 34276472 - 34276516
Alignment:
Q  168 caaatcattggaaatcgtcatgaagtaagtttctacgctcatcaa 212  Q
    |||||||||| |||||||||||||  |||||||||||| ||||||    
T  34276472 caaatcattgcaaatcgtcatgaaacaagtttctacgcccatcaa 34276516  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 51; Significance: 3e-20; HSPs: 9)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 86 - 187
Target Start/End: Complemental strand, 51410328 - 51410226
Alignment:
Q  86 tccacacttcaaacacacacttctttccctcttcacctccaaaacacccaaaagtatgattttttggtg-aaaatcttgagctcaaatcattggaaatcg 184  Q
    ||||||||||||| ||||||||||| | ||||||| || |||||||||||||||||  ||||||||| | |||| |||||||||||||||||| ||| ||    
T  51410328 tccacacttcaaatacacacttcttcctctcttcaacttcaaaacacccaaaagtacaattttttggagcaaaagcttgagctcaaatcattgaaaaacg 51410229  T
Q  185 tca 187  Q
    |||    
T  51410228 tca 51410226  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 106 - 212
Target Start/End: Complemental strand, 14443857 - 14443752
Alignment:
Q  106 ttctttccctcttcacctccaaaacacccaaaagtatgatttttt-ggtgaaaatcttgagctcaaatcattggaaatcgtcatgaagtaagtttctacg 204  Q
    |||||||||||  |||||||||||  || ||||||  |||||||| ||| |||||| | | | |||||||||| ||||||||| ||||||||||||||||    
T  14443857 ttctttccctc--cacctccaaaaacccaaaaagtgcgattttttcggtcaaaatcctcatcccaaatcattgcaaatcgtcaggaagtaagtttctacg 14443760  T
Q  205 ctcatcaa 212  Q
    ||||||||    
T  14443759 ctcatcaa 14443752  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 168 - 212
Target Start/End: Original strand, 53767287 - 53767331
Alignment:
Q  168 caaatcattggaaatcgtcatgaagtaagtttctacgctcatcaa 212  Q
    |||||||||| |||||||||||||| |||||||||||||||||||    
T  53767287 caaatcattgcaaatcgtcatgaagcaagtttctacgctcatcaa 53767331  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 168 - 212
Target Start/End: Complemental strand, 20518125 - 20518081
Alignment:
Q  168 caaatcattggaaatcgtcatgaagtaagtttctacgctcatcaa 212  Q
    |||| ||||| |||||||||||||| |||||||||||||||||||    
T  20518125 caaagcattgtaaatcgtcatgaagcaagtttctacgctcatcaa 20518081  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 168 - 212
Target Start/End: Complemental strand, 30933871 - 30933827
Alignment:
Q  168 caaatcattggaaatcgtcatgaagtaagtttctacgctcatcaa 212  Q
    |||||||||| ||||||||| |||| |||||||||||||||||||    
T  30933871 caaatcattgcaaatcgtcaggaagcaagtttctacgctcatcaa 30933827  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 168 - 212
Target Start/End: Original strand, 54335717 - 54335761
Alignment:
Q  168 caaatcattggaaatcgtcatgaagtaagtttctacgctcatcaa 212  Q
    |||||||||| ||||||||| |||| |||||||||||||||||||    
T  54335717 caaatcattgcaaatcgtcaggaagcaagtttctacgctcatcaa 54335761  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 168 - 212
Target Start/End: Complemental strand, 7666765 - 7666721
Alignment:
Q  168 caaatcattggaaatcgtcatgaagtaagtttctacgctcatcaa 212  Q
    |||||||||| ||||| ||| ||| ||||||||||||||||||||    
T  7666765 caaatcattgcaaatcatcaggaaataagtttctacgctcatcaa 7666721  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 168 - 212
Target Start/End: Original strand, 11916993 - 11917037
Alignment:
Q  168 caaatcattggaaatcgtcatgaagtaagtttctacgctcatcaa 212  Q
    |||||| ||| ||||||||| |||| |||||||||||||||||||    
T  11916993 caaatctttgcaaatcgtcaggaagcaagtttctacgctcatcaa 11917037  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 168 - 212
Target Start/End: Original strand, 35995367 - 35995411
Alignment:
Q  168 caaatcattggaaatcgtcatgaagtaagtttctacgctcatcaa 212  Q
    |||||||||| ||||||||| |||  |||||||||||||||||||    
T  35995367 caaatcattgcaaatcgtcaggaaacaagtttctacgctcatcaa 35995411  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 50; Significance: 1e-19; HSPs: 8)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 161 - 250
Target Start/End: Complemental strand, 12892463 - 12892374
Alignment:
Q  161 ttgagctcaaatcattggaaatcgtcatgaagtaagtttctacgctcatcaaaagtctagaatcaggtaatgcatcatcttaactattta 250  Q
    |||||||| ||||||||||||||||||||||||||||||||| ||| |||||| ||  | |||||||||||| ||||||| | |||||||    
T  12892463 ttgagctccaatcattggaaatcgtcatgaagtaagtttctatgctaatcaaacgttaaaaatcaggtaatgtatcatctaacctattta 12892374  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 101 - 141
Target Start/End: Complemental strand, 12892507 - 12892467
Alignment:
Q  101 cacacttctttccctcttcacctccaaaacacccaaaagta 141  Q
    |||||||||||||||||||||||||||||||||||||||||    
T  12892507 cacacttctttccctcttcacctccaaaacacccaaaagta 12892467  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 169 - 212
Target Start/End: Complemental strand, 22787850 - 22787807
Alignment:
Q  169 aaatcattggaaatcgtcatgaagtaagtttctacgctcatcaa 212  Q
    ||||||||| ||||||||||||||||||||||||||||||||||    
T  22787850 aaatcattgcaaatcgtcatgaagtaagtttctacgctcatcaa 22787807  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 155 - 240
Target Start/End: Original strand, 19987774 - 19987859
Alignment:
Q  155 aaaatcttgagctcaaatcattggaaatcgtcatgaagtaagtttctacgctcatcaaaagtctagaatcaggtaatgcatcatct 240  Q
    ||||||||||||| ||||||| | |||| |||| |||| |||||||||||||||| ||| ||  | ||| |||||||| |||||||    
T  19987774 aaaatcttgagctgaaatcatcgcaaattgtcaggaagcaagtttctacgctcatgaaacgtaaaaaattaggtaatgtatcatct 19987859  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 168 - 245
Target Start/End: Complemental strand, 20927581 - 20927504
Alignment:
Q  168 caaatcattggaaatcgtcatgaagtaagtttctacgctcatcaaaagtctagaatcaggtaatgcatcatcttaact 245  Q
    |||||||||| ||||||||| |||| |||||||||||||||||||   || |  ||||||||||| ||||||| ||||    
T  20927581 caaatcattgcaaatcgtcaggaagcaagtttctacgctcatcaagcatcaaatatcaggtaatgtatcatctaaact 20927504  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 168 - 212
Target Start/End: Complemental strand, 9829420 - 9829376
Alignment:
Q  168 caaatcattggaaatcgtcatgaagtaagtttctacgctcatcaa 212  Q
    |||||||||| ||||||||| |||| |||||||||||||||||||    
T  9829420 caaatcattgcaaatcgtcaggaagcaagtttctacgctcatcaa 9829376  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 34 - 240
Target Start/End: Complemental strand, 10331867 - 10331661
Alignment:
Q  34 tgagttaactcatattgcgatgcattacctgttttaggccatttctagcacatccacacttcaaacacacacttctttccctcttcacctccaaaacacc 133  Q
    ||||||||||||  ||||||| |||| | | |||||||||||  |  |||| ||||||||||||| |  ||||||||||||||||||| || |||| | |    
T  10331867 tgagttaactcacgttgcgatccatttc-tattttaggccatcacctgcacctccacacttcaaaaaagcacttctttccctcttcacttctaaaaaatc 10331769  T
Q  134 caaaagtatgattttttggtg-aaaatcttgagctcaaatcattggaaatcgtcatgaagtaagtttctacgctcatcaaaagtctagaatcaggtaatg 232  Q
      |||||   |   ||| ||| ||||||||||||| ||||||||| ||| | ||| |||  ||| || |||| |||||||||||| | |||||||||||     
T  10331768 ataaagtgaaaaaattttgtgcaaaatcttgagcttaaatcattgcaaaacatcaagaaccaagcttatacgatcatcaaaagtcaaaaatcaggtaatt 10331669  T
Q  233 catcatct 240  Q
     |||||||    
T  10331668 tatcatct 10331661  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 168 - 212
Target Start/End: Complemental strand, 8277259 - 8277215
Alignment:
Q  168 caaatcattggaaatcgtcatgaagtaagtttctacgctcatcaa 212  Q
    |||||||||| ||||||||| |||  |||||||||||||||||||    
T  8277259 caaatcattgcaaatcgtcaggaaacaagtttctacgctcatcaa 8277215  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 42; Significance: 0.000000000000006; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 169 - 254
Target Start/End: Complemental strand, 18426440 - 18426355
Alignment:
Q  169 aaatcattggaaatcgtcatgaagtaagtttctacgctcatcaaaagtctagaatcaggtaatgcatcatcttaactatttacatt 254  Q
    ||||||||| ||||||||| |||| |||||||||||||||||||| ||| | |||||| ||||| ||||||| |||| ||| ||||    
T  18426440 aaatcattgcaaatcgtcaggaagcaagtttctacgctcatcaaacgtcaaaaatcagataatgtatcatctaaactcttttcatt 18426355  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 143 - 212
Target Start/End: Complemental strand, 16315229 - 16315159
Alignment:
Q  143 gattttttgg-tgaaaatcttgagctcaaatcattggaaatcgtcatgaagtaagtttctacgctcatcaa 212  Q
    |||||||||| | |||||||| | | |||||||||| ||||||||| |||| |||||||||||||||||||    
T  16315229 gattttttggatcaaaatcttcatcccaaatcattgcaaatcgtcaggaagcaagtttctacgctcatcaa 16315159  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 168 - 212
Target Start/End: Original strand, 23941698 - 23941742
Alignment:
Q  168 caaatcattggaaatcgtcatgaagtaagtttctacgctcatcaa 212  Q
    |||||||||| ||||||||| |||| ||||||||||| |||||||    
T  23941698 caaatcattgcaaatcgtcaggaagcaagtttctacgttcatcaa 23941742  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1063 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold1063
Description:

Target: scaffold1063; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 168 - 212
Target Start/End: Original strand, 1706 - 1750
Alignment:
Q  168 caaatcattggaaatcgtcatgaagtaagtttctacgctcatcaa 212  Q
    |||||||||| ||||||||| |||  |||||||||||||||||||    
T  1706 caaatcattgcaaatcgtcaggaaacaagtttctacgctcatcaa 1750  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0599 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0599
Description:

Target: scaffold0599; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 168 - 212
Target Start/End: Original strand, 8744 - 8788
Alignment:
Q  168 caaatcattggaaatcgtcatgaagtaagtttctacgctcatcaa 212  Q
    |||||| ||| ||||||||| |||| |||||||||||||||||||    
T  8744 caaatctttgcaaatcgtcaggaagcaagtttctacgctcatcaa 8788  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0037 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0037
Description:

Target: scaffold0037; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 168 - 212
Target Start/End: Complemental strand, 38185 - 38141
Alignment:
Q  168 caaatcattggaaatcgtcatgaagtaagtttctacgctcatcaa 212  Q
    |||||||||| ||||||||| |||  |||||||||||||||||||    
T  38185 caaatcattgcaaatcgtcaggaaacaagtttctacgctcatcaa 38141  T

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