View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18106_low_19 (Length: 254)
Name: NF18106_low_19
Description: NF18106
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18106_low_19 |
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| [»] chr5 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 236; Significance: 1e-130; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 236; E-Value: 1e-130
Query Start/End: Original strand, 15 - 254
Target Start/End: Complemental strand, 2909385 - 2909146
Alignment:
| Q |
15 |
cacagatggatcttgtttggtagaattatggggagtgttggaagatctcatgtatgctagaaggttgcaattttggtttattgagttgcatgttgactcc |
114 |
Q |
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| T |
2909385 |
cacagatggatcttgtttggtagaattatggggagtgttggaagatctcatgtatgctagaaggttgcaattttggtttattgagttgcatgttgactcc |
2909286 |
T |
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| Q |
115 |
ttaattattgtgaaagctatcacttcacatgggcatcgtagctatggagagaggtcgttagtcgagaagattcatcgattgcttgcacttgattgagaag |
214 |
Q |
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| T |
2909285 |
ttaattattgtgaaagctatcacttcacataggcatcgtagctatggagagaggtcgttagtcgagaagattcatcgattgcttgcacttgattgagaag |
2909186 |
T |
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| Q |
215 |
ttgttgttcgccactcttaccgtgaagcaaaccaatgcac |
254 |
Q |
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| T |
2909185 |
ttgttgttcgccactcttaccgtgaagcaaaccaatgcac |
2909146 |
T |
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Target: chr3 (Bit Score: 89; Significance: 5e-43; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 89; E-Value: 5e-43
Query Start/End: Original strand, 72 - 252
Target Start/End: Complemental strand, 37054119 - 37053940
Alignment:
| Q |
72 |
tagaaggttgcaattttggtttattgagttgcatgttgactccttaattattgtgaaagctatcacttcacatgggcatcgtagctatggagagaggtcg |
171 |
Q |
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| T |
37054119 |
tagaaggttgcaattttgatttattgagttgcatgttgactccttagttattgtaaaagctatcacttcacatgtgcatgatagctagagaaggaggtag |
37054020 |
T |
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| Q |
172 |
ttagtcgagaagattcatcgattgcttgcacttgattgagaagttgttgttcgccactcttaccgtgaagcaaaccaatgc |
252 |
Q |
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| T |
37054019 |
ctagttgagaagattcatcgcttcctttcacttgattgagaagttgttgtt-atcactcttatcatgaagcaaatcaatgc |
37053940 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 36 - 246
Target Start/End: Complemental strand, 31976670 - 31976459
Alignment:
| Q |
36 |
agaattatggggagtgttggaagatctcatgtatgctagaaggttgcaattttggtttattgagttgcatgttgactccttaattattgtgaaagctatc |
135 |
Q |
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| T |
31976670 |
agaattatgtggagtgttggaagggctcatgtatgtcagaaggttgtaatttcgatttattgagttacatgttgacttcttacttgttgtgaaagcaatc |
31976571 |
T |
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| Q |
136 |
acttcacatgggcatcgtagctatggagagaggtcgttagtcgagaagattcatc-gattgcttgcacttgattgagaagttgttgttcgccactcttac |
234 |
Q |
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| T |
31976570 |
acttcacatgagcatggtagttggagaaggaggttgctggttaacaagattcatcactttgcttgcacttgattgagaagttgttgttcatcacttttac |
31976471 |
T |
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| Q |
235 |
cgtgaagcaaac |
246 |
Q |
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| T |
31976470 |
cgttaaacaaac |
31976459 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 73; Significance: 2e-33; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 30 - 251
Target Start/End: Complemental strand, 156448 - 156220
Alignment:
| Q |
30 |
tttggtagaattatggggagtgttggaagatctcatgtatgctagaaggttgcaattttggtttattgagttgcatgttgactccttaattat-----tg |
124 |
Q |
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| T |
156448 |
tttggcagaattgtggggagtgttggaagggcacatgtatgccagaaggttgcaatttcgatttattgaggtgcatgttgactccttagttgttgtcatg |
156349 |
T |
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| Q |
125 |
tgaaagctatcacttc-acatgggcatcgtagctatggagagaggtcgttagtcgagaagattcatcgattgcttgcacttgattgagaagttgttgtt- |
222 |
Q |
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| T |
156348 |
tcaaagttatcacttcaacgtgggcatggtagtttgagagggagatcgctagttgacaagattcatcgcttgcttgcacttgattcggaagttgttgttc |
156249 |
T |
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| Q |
223 |
cgccactcttaccgtgaagcaaaccaatg |
251 |
Q |
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| T |
156248 |
caccactcttaccgtgaaaaaaaccaatg |
156220 |
T |
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