View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18106_low_2 (Length: 654)
Name: NF18106_low_2
Description: NF18106
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18106_low_2 |
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Alignment Details
Target: chr6 (Bit Score: 288; Significance: 1e-161; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 288; E-Value: 1e-161
Query Start/End: Original strand, 18 - 342
Target Start/End: Complemental strand, 12683012 - 12682682
Alignment:
| Q |
18 |
tgttgttgcactgttacagttggattttgaacttgctgcggtgtaggtattgctggtatcggtatcggcaatggtgctgctgctgctggcaacggtactg |
117 |
Q |
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| T |
12683012 |
tgttgttgcactgttacagttggattttgaacttgctgcggtgtaggtattgctggtatcggtattggcaatggtgctgctgctgctggcaacggtactg |
12682913 |
T |
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| Q |
118 |
gtgttggtgttggtgt------cggtttcggtgttggggttggtgtagtttcttgcggcgcttgttgctgctgaggaacaatggtactgttgttcaatac |
211 |
Q |
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| T |
12682912 |
gtgttggtgttggtgttggtgtcggtttcggtgttggggttggtatagtttcttgcggcgcttgttgctgctgaggaacaatggtgctgttgttcaatac |
12682813 |
T |
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| Q |
212 |
aggaggaacaagaatttgttgttcttgttgttcagcaatcttctgcaaaaaagccataacagcagcatctttggtagcagcaagagatctctcttgagca |
311 |
Q |
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| T |
12682812 |
aggaggaacaagattttgttgttcttgttgttcagcaatcttctgcaaaaaagccataacagcagcatctttagtagcagcaagagatctctcttgagca |
12682713 |
T |
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| Q |
312 |
agaatttccctttctctattaatcctttgca |
342 |
Q |
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| T |
12682712 |
agaatttccctttctctattaatcctttgca |
12682682 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 233; E-Value: 1e-128
Query Start/End: Original strand, 399 - 631
Target Start/End: Complemental strand, 12682625 - 12682393
Alignment:
| Q |
399 |
atagcttccaagaatctcttatgtaactcctcttgtttctcaacaacctccttcattagtctctcaaagaaatccttccatttcctcttcctcttccgcc |
498 |
Q |
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| T |
12682625 |
atagcttccaagaatctcttatgtaactcctcttgtttctcaacaacctccttcattagtctctcaaagaaatccttccatttcctcttcctcttccgcc |
12682526 |
T |
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| Q |
499 |
gattcgatcccccttccattgtcgtcgtttcctcagaagaagttgaagacgaacttgaattcgagaagaaatctgttgaaatgttggggaatgatgatgg |
598 |
Q |
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| T |
12682525 |
gattcgatcccccttccattgtcgtcgtttcctcagaagaagttgaagacgaacttgaattcgagaagaaatctgttgaaatgttggggaatgatgatgg |
12682426 |
T |
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| Q |
599 |
tgggggtgttgtagtaatttgaggaatagggtt |
631 |
Q |
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| T |
12682425 |
tgggggtgttgtagtaatttgaggaatagggtt |
12682393 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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