View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18106_low_20 (Length: 251)
Name: NF18106_low_20
Description: NF18106
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18106_low_20 |
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Alignment Details
Target: chr7 (Bit Score: 158; Significance: 4e-84; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 158; E-Value: 4e-84
Query Start/End: Original strand, 16 - 225
Target Start/End: Complemental strand, 7717244 - 7717041
Alignment:
| Q |
16 |
ttgttatcaccaatctagtgagatagcatagcatcccacgtacgttgacagatcatcctcggataacacgagggtcttaaaaatattattgaacgtgaca |
115 |
Q |
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| T |
7717244 |
ttgttatcaccaatctagtgagatagcat-----cccacgtacgttgacagatcatt-tcggataacacaagggtcttaaaaatattattgaacgtgata |
7717151 |
T |
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| Q |
116 |
ttacacaaggcacaatggtcccacccattttagttggtatgaattaacaattaagagtgttaagaaaaatggaaaacatgtgatcataatttgaaaatta |
215 |
Q |
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| T |
7717150 |
ttacacaaggcaccatggtcccacccattttacttggtaagaattaacaattaagagtgttaagaaaaatggaaaacatgtgatcataatttgaaaatta |
7717051 |
T |
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| Q |
216 |
acatagggta |
225 |
Q |
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|||||||||| |
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| T |
7717050 |
acatagggta |
7717041 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 131 - 225
Target Start/End: Complemental strand, 7715919 - 7715823
Alignment:
| Q |
131 |
tggtcccacccattttagttggtatgaattaacaattaagagtgttaagaaaa--atggaaaacatgtgatcataatttgaaaattaacatagggta |
225 |
Q |
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||||||||||||||||| |||||| |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
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| T |
7715919 |
tggtcccacccattttaattggtaagaattaacaattaagagtgttaagaaaaatatggaaaacatgtgatcataatttgaaaattaacatagggta |
7715823 |
T |
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