View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF18106_low_3 (Length: 630)
Name: NF18106_low_3
Description: NF18106
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18106_low_3 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 160; Significance: 6e-85; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 160; E-Value: 6e-85
Query Start/End: Original strand, 350 - 509
Target Start/End: Complemental strand, 24618577 - 24618418
Alignment:
| Q |
350 |
ctatgcaataatttccttgtgattgccagcacctctaagaatttctattttcctctcttcccaagcacagtttaatctgcgtgcaaattcttccacttcc |
449 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
24618577 |
ctatgcaataatttccttgtgattgccagcacctctaagaatttctattttcctctcttcccaagcacagtttaatctgcgtgcaaattcttccacttcc |
24618478 |
T |
|
| Q |
450 |
ctgtcaattttttcctgcaagacctgatcaatctcatcattaaactcaaccacaggatca |
509 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
24618477 |
ctgtcaattttttcctgcaagacctgatcaatctcatcattaaactcaaccacaggatca |
24618418 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 111; Significance: 1e-55; HSPs: 9)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 111; E-Value: 1e-55
Query Start/End: Original strand, 351 - 509
Target Start/End: Complemental strand, 1344188 - 1344030
Alignment:
| Q |
351 |
tatgcaataatttccttgtgattgccagcacctctaagaatttctattttcctctcttcccaagcacagtttaatctgcgtgcaaattcttccacttccc |
450 |
Q |
| |
|
||||||||||||||| |||||||||||||| |||||||||||||| |||| ||||||||||||| ||| ||||||||||||||||||||||| ||||||| |
|
|
| T |
1344188 |
tatgcaataatttccctgtgattgccagcatctctaagaatttctttttttctctcttcccaagaacaatttaatctgcgtgcaaattcttcgacttccc |
1344089 |
T |
|
| Q |
451 |
tgtcaattttttcctgcaagacctgatcaatctcatcattaaactcaaccacaggatca |
509 |
Q |
| |
|
|||||||| ||||||| ||| |||||||||||||||||| ||||||||||||| ||||| |
|
|
| T |
1344088 |
tgtcaattctttcctgtaaggcctgatcaatctcatcatcaaactcaaccacaagatca |
1344030 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 111; E-Value: 1e-55
Query Start/End: Original strand, 351 - 509
Target Start/End: Original strand, 1355399 - 1355557
Alignment:
| Q |
351 |
tatgcaataatttccttgtgattgccagcacctctaagaatttctattttcctctcttcccaagcacagtttaatctgcgtgcaaattcttccacttccc |
450 |
Q |
| |
|
||||||||||||||| |||||||||||||| |||||||||||||| |||| ||||||||||||| ||| ||||||||||||||||||||||| ||||||| |
|
|
| T |
1355399 |
tatgcaataatttccctgtgattgccagcatctctaagaatttctttttttctctcttcccaagaacaatttaatctgcgtgcaaattcttcgacttccc |
1355498 |
T |
|
| Q |
451 |
tgtcaattttttcctgcaagacctgatcaatctcatcattaaactcaaccacaggatca |
509 |
Q |
| |
|
|||||||| ||||||| ||| |||||||||||||||||| ||||||||||||| ||||| |
|
|
| T |
1355499 |
tgtcaattctttcctgtaaggcctgatcaatctcatcatcaaactcaaccacaagatca |
1355557 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 107; E-Value: 3e-53
Query Start/End: Original strand, 179 - 305
Target Start/End: Original strand, 1355223 - 1355349
Alignment:
| Q |
179 |
tcatatcagaattctaattattatgttgtaacctgcaagagtaaaaatataattaatgccaatttatactaatgatttctaatcctgaacaagatttgct |
278 |
Q |
| |
|
|||||||||| |||||||||||||| ||||||||||||||||||||||||||| |||| ||| ||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1355223 |
tcatatcagatttctaattattatgctgtaacctgcaagagtaaaaatataataaatgtcaacttatactaatgatttctaatcctgaacaagatttgct |
1355322 |
T |
|
| Q |
279 |
aatattgagaagagttttgtccataag |
305 |
Q |
| |
|
||||||||||||||||||||||||||| |
|
|
| T |
1355323 |
aatattgagaagagttttgtccataag |
1355349 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 98; E-Value: 6e-48
Query Start/End: Original strand, 21 - 134
Target Start/End: Complemental strand, 1344435 - 1344322
Alignment:
| Q |
21 |
agatagctcaagcactcatagaagtggaactttctaaaagatttacatgattctaatatttgaaatcatgcaccgtgttcaacacaatatagcattagca |
120 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||| |||||||||||||||||| |
|
|
| T |
1344435 |
agatagctcaagcactcatagaagtggaactttctaaaagatttacgtcattctaatatttgaaatcatgcaccgtgttcagcacaatatagcattagca |
1344336 |
T |
|
| Q |
121 |
tcataattataatc |
134 |
Q |
| |
|
| |||||||||||| |
|
|
| T |
1344335 |
tgataattataatc |
1344322 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 21 - 83
Target Start/End: Original strand, 1355127 - 1355189
Alignment:
| Q |
21 |
agatagctcaagcactcatagaagtggaactttctaaaagatttacatgattctaatatttga |
83 |
Q |
| |
|
||||||||||||||||||||||| ||||||||||||||||||||||||||| ||||||||||| |
|
|
| T |
1355127 |
agatagctcaagcactcatagaaatggaactttctaaaagatttacatgatcctaatatttga |
1355189 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 252 - 305
Target Start/End: Complemental strand, 1344291 - 1344238
Alignment:
| Q |
252 |
gatttctaatcctgaacaagatttgctaatattgagaagagttttgtccataag |
305 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
|
|
| T |
1344291 |
gatttctaatcctgaacaagatttgctaatattaagaagagttttgtccataag |
1344238 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #7
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 382 - 506
Target Start/End: Complemental strand, 1361261 - 1361143
Alignment:
| Q |
382 |
ctctaagaatttctattttcctctcttcccaagcacagtttaatctgcgtgcaaattcttccacttccctgtcaattttttcctgcaagacctgatcaat |
481 |
Q |
| |
|
|||||||||||||| || | |||||||| | || ||| ||||||||||| ||||||||||||||||| ||||| | || ||| | |||||||| |
|
|
| T |
1361261 |
ctctaagaatttcttttattctctcttcgcgagtacaatttaatctgcgcgcaaattcttccacttctttgtcagtcatt------aagtcatgatcaat |
1361168 |
T |
|
| Q |
482 |
ctcatcattaaactcaaccacagga |
506 |
Q |
| |
|
|||||||| |||||||||||||||| |
|
|
| T |
1361167 |
ctcatcatcaaactcaaccacagga |
1361143 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #8
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 382 - 454
Target Start/End: Complemental strand, 1350687 - 1350615
Alignment:
| Q |
382 |
ctctaagaatttctattttcctctcttcccaagcacagtttaatctgcgtgcaaattcttccacttccctgtc |
454 |
Q |
| |
|
|||||||| ||||| || | ||||||||| ||| || ||||||||||| ||||||||||||||||| ||||| |
|
|
| T |
1350687 |
ctctaagagtttcttttattctctcttccaaagtgcaatttaatctgcgcgcaaattcttccacttctctgtc |
1350615 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #9
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 269 - 314
Target Start/End: Complemental strand, 1361329 - 1361280
Alignment:
| Q |
269 |
aagatttgctaata----ttgagaagagttttgtccataaggttactcat |
314 |
Q |
| |
|
|||||||||||||| |||||||||||||| ||||||||||||||||| |
|
|
| T |
1361329 |
aagatttgctaataattgttgagaagagttttatccataaggttactcat |
1361280 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 38; Significance: 0.000000000004; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 420 - 489
Target Start/End: Original strand, 43364468 - 43364537
Alignment:
| Q |
420 |
tttaatctgcgtgcaaattcttccacttccctgtcaattttttcctgcaagacctgatcaatctcatcat |
489 |
Q |
| |
|
||||||||||| |||||||||||||||||||| |||||| || | || ||| || ||||||||||||||| |
|
|
| T |
43364468 |
tttaatctgcgggcaaattcttccacttccctatcaattcttgcttgtaaggccggatcaatctcatcat |
43364537 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University