View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18106_low_6 (Length: 464)

Name: NF18106_low_6
Description: NF18106
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18106_low_6
NF18106_low_6
[»] chr2 (3 HSPs)
chr2 (141-402)||(37641955-37642217)
chr2 (18-75)||(37641836-37641893)
chr2 (417-464)||(29758119-29758166)
[»] scaffold0251 (1 HSPs)
scaffold0251 (403-464)||(6211-6272)
[»] chr5 (3 HSPs)
chr5 (402-464)||(39787244-39787306)
chr5 (411-455)||(25076310-25076354)
chr5 (411-455)||(25134279-25134323)
[»] chr4 (14 HSPs)
chr4 (402-464)||(23985758-23985820)
chr4 (403-464)||(52545286-52545347)
chr4 (403-464)||(3529332-3529393)
chr4 (403-464)||(24807409-24807470)
chr4 (411-454)||(18320071-18320114)
chr4 (411-454)||(18398569-18398612)
chr4 (417-464)||(7040360-7040407)
chr4 (417-464)||(23564860-23564907)
chr4 (411-464)||(18395819-18395872)
chr4 (417-461)||(18656107-18656151)
chr4 (417-464)||(23566534-23566581)
chr4 (417-464)||(52518758-52518805)
chr4 (417-464)||(52520600-52520647)
chr4 (417-462)||(3274627-3274672)
[»] chr6 (13 HSPs)
chr6 (403-464)||(33869231-33869292)
chr6 (401-463)||(15866563-15866625)
chr6 (403-464)||(15868377-15868438)
chr6 (403-464)||(32079895-32079956)
chr6 (403-464)||(33866084-33866145)
chr6 (402-461)||(14611068-14611127)
chr6 (403-464)||(14620496-14620557)
chr6 (417-464)||(5376876-5376923)
chr6 (417-464)||(5378731-5378778)
chr6 (417-464)||(15149230-15149277)
chr6 (417-464)||(19645485-19645532)
chr6 (419-461)||(1088841-1088883)
chr6 (417-461)||(28884443-28884487)
[»] chr1 (13 HSPs)
chr1 (403-464)||(3282786-3282847)
chr1 (403-464)||(3284487-3284548)
chr1 (403-464)||(9312014-9312075)
chr1 (403-464)||(37664740-37664801)
chr1 (403-464)||(37674462-37674523)
chr1 (403-464)||(37702171-37702232)
chr1 (402-464)||(902061-902123)
chr1 (403-464)||(9310397-9310458)
chr1 (403-464)||(5924959-5925020)
chr1 (417-464)||(16808764-16808811)
chr1 (417-464)||(48940675-48940722)
chr1 (417-461)||(17449310-17449354)
chr1 (411-456)||(36580555-36580600)
[»] scaffold0006 (1 HSPs)
scaffold0006 (402-464)||(39129-39191)
[»] chr7 (8 HSPs)
chr7 (402-464)||(37405635-37405697)
chr7 (401-464)||(25471956-25472019)
chr7 (417-464)||(4895583-4895630)
chr7 (417-464)||(20046682-20046729)
chr7 (417-464)||(28124773-28124820)
chr7 (417-464)||(28126600-28126647)
chr7 (417-464)||(44963162-44963209)
chr7 (415-451)||(26736794-26736830)
[»] scaffold0057 (1 HSPs)
scaffold0057 (403-464)||(58771-58832)
[»] chr8 (8 HSPs)
chr8 (403-464)||(14935562-14935623)
chr8 (417-464)||(30224229-30224276)
chr8 (417-461)||(5567425-5567469)
chr8 (417-464)||(3375608-3375655)
chr8 (417-464)||(31032184-31032231)
chr8 (417-458)||(3379305-3379346)
chr8 (417-464)||(25249002-25249052)
chr8 (417-457)||(6428739-6428779)
[»] chr3 (1 HSPs)
chr3 (417-464)||(17402968-17403015)


Alignment Details
Target: chr2 (Bit Score: 147; Significance: 2e-77; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 147; E-Value: 2e-77
Query Start/End: Original strand, 141 - 402
Target Start/End: Original strand, 37641955 - 37642217
Alignment:
Q  141 gttgttgaaataaggcagatgttgatcttaacaaacgttgtacttgccattcagaagaaacaaacattttactctaatgttggattcaatatatttatgt 240  Q
    ||||||||||| ||  |||||||||||||||||||||||||||||| ||||||||| |||||||| || |||||||||||||||||||||||||||||||    
T  37641955 gttgttgaaatgagctagatgttgatcttaacaaacgttgtacttgtcattcagaaaaaacaaacgttgtactctaatgttggattcaatatatttatgt 37642054  T
Q  241 gaaatttgttgtggcaaattatgaattcatcaaatttacacaccgagtagttgaaagagaaaagaggtagaacctaataataaatatggagacttacnnn 340  Q
    | ||||||||||||||||||||||||||||| |||||||||||| ||||||||||||| ||||||||||||    | |||||||||||||||||| |       
T  37642055 ggaatttgttgtggcaaattatgaattcatccaatttacacaccaagtagttgaaagaaaaaagaggtaga---gactaataaatatggagacttgcatt 37642151  T
Q  341 nnnnngtaacggcaaacaa----atgtatttatttaattggataaagtattagtataagtggtact 402  Q
         ||||||||||||||    |||||| |||||||||||||||||||||| |||||||||||||    
T  37642152 attttgtaacggcaaacaaatgtatgtatgtatttaattggataaagtattaatataagtggtact 37642217  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 18 - 75
Target Start/End: Original strand, 37641836 - 37641893
Alignment:
Q  18 tataaattgagcttcttaattagcttataaatttatagataaacataaaaatgataag 75  Q
    |||||||||||||  | |||||||||||||||||||||||||||||||||||||||||    
T  37641836 tataaattgagctattaaattagcttataaatttatagataaacataaaaatgataag 37641893  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 417 - 464
Target Start/End: Original strand, 29758119 - 29758166
Alignment:
Q  417 taatcaactatagttaattgataggtaaactagagttagtagcttggt 464  Q
    |||||||||||||||| |||||| ||||||||||||||||||||||||    
T  29758119 taatcaactatagttagttgataagtaaactagagttagtagcttggt 29758166  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0251 (Bit Score: 58; Significance: 3e-24; HSPs: 1)
Name: scaffold0251
Description:

Target: scaffold0251; HSP #1
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 403 - 464
Target Start/End: Original strand, 6211 - 6272
Alignment:
Q  403 tattagaatatgaataatcaactatagttaattgataggtaaactagagttagtagcttggt 464  Q
    ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6211 tattagagtatgaataatcaactatagttaattgataggtaaactagagttagtagcttggt 6272  T

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Target: chr5 (Bit Score: 55; Significance: 2e-22; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 402 - 464
Target Start/End: Complemental strand, 39787306 - 39787244
Alignment:
Q  402 ttattagaatatgaataatcaactatagttaattgataggtaaactagagttagtagcttggt 464  Q
    |||||||| |||||||||||||||||||||| |||||||||||||||||||||||||||||||    
T  39787306 ttattagagtatgaataatcaactatagttagttgataggtaaactagagttagtagcttggt 39787244  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 411 - 455
Target Start/End: Complemental strand, 25076354 - 25076310
Alignment:
Q  411 tatgaataatcaactatagttaattgataggtaaactagagttag 455  Q
    |||||||||||||||||||||| ||||||||| ||||||| ||||    
T  25076354 tatgaataatcaactatagttagttgataggttaactagaattag 25076310  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 411 - 455
Target Start/End: Complemental strand, 25134323 - 25134279
Alignment:
Q  411 tatgaataatcaactatagttaattgataggtaaactagagttag 455  Q
    |||||||||||||||||||||| ||||||||| ||||||| ||||    
T  25134323 tatgaataatcaactatagttagttgataggttaactagaattag 25134279  T

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Target: chr4 (Bit Score: 55; Significance: 2e-22; HSPs: 14)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 402 - 464
Target Start/End: Original strand, 23985758 - 23985820
Alignment:
Q  402 ttattagaatatgaataatcaactatagttaattgataggtaaactagagttagtagcttggt 464  Q
    |||||||| |||||||||||||||||||||| |||||||||||||||||||||||||||||||    
T  23985758 ttattagagtatgaataatcaactatagttagttgataggtaaactagagttagtagcttggt 23985820  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 54; E-Value: 8e-22
Query Start/End: Original strand, 403 - 464
Target Start/End: Complemental strand, 52545347 - 52545286
Alignment:
Q  403 tattagaatatgaataatcaactatagttaattgataggtaaactagagttagtagcttggt 464  Q
    ||||||| |||||||||||||||||||||| |||||||||||||||||||||||||||||||    
T  52545347 tattagagtatgaataatcaactatagttagttgataggtaaactagagttagtagcttggt 52545286  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 403 - 464
Target Start/End: Complemental strand, 3529393 - 3529332
Alignment:
Q  403 tattagaatatgaataatcaactatagttaattgataggtaaactagagttagtagcttggt 464  Q
    ||||||| ||||||||||||||| |||||| ||||||||||||||| |||||||||||||||    
T  3529393 tattagagtatgaataatcaactgtagttagttgataggtaaactaaagttagtagcttggt 3529332  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 403 - 464
Target Start/End: Original strand, 24807409 - 24807470
Alignment:
Q  403 tattagaatatgaataatcaactatagttaattgataggtaaactagagttagtagcttggt 464  Q
    ||||||| |||||||||||||||||||||| |||||||||||| ||||||||| ||||||||    
T  24807409 tattagagtatgaataatcaactatagttagttgataggtaaattagagttagaagcttggt 24807470  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 411 - 454
Target Start/End: Original strand, 18320071 - 18320114
Alignment:
Q  411 tatgaataatcaactatagttaattgataggtaaactagagtta 454  Q
    ||||||||||||||||||||||||||||||||||||||||||||    
T  18320071 tatgaataatcaactatagttaattgataggtaaactagagtta 18320114  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 411 - 454
Target Start/End: Complemental strand, 18398612 - 18398569
Alignment:
Q  411 tatgaataatcaactatagttaattgataggtaaactagagtta 454  Q
    ||||||||||||||||||||||||||||||||||||||||||||    
T  18398612 tatgaataatcaactatagttaattgataggtaaactagagtta 18398569  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 417 - 464
Target Start/End: Original strand, 7040360 - 7040407
Alignment:
Q  417 taatcaactatagttaattgataggtaaactagagttagtagcttggt 464  Q
    |||||||||||||||| |||||| ||||||||||||||||||||||||    
T  7040360 taatcaactatagttagttgataagtaaactagagttagtagcttggt 7040407  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 417 - 464
Target Start/End: Complemental strand, 23564907 - 23564860
Alignment:
Q  417 taatcaactatagttaattgataggtaaactagagttagtagcttggt 464  Q
    |||||||||||||||| |||||| ||||||||||||||||||||||||    
T  23564907 taatcaactatagttagttgataagtaaactagagttagtagcttggt 23564860  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 411 - 464
Target Start/End: Complemental strand, 18395872 - 18395819
Alignment:
Q  411 tatgaataatcaactatagttaattgataggtaaactagagttagtagcttggt 464  Q
    |||||||||||||||||||||| ||||||||||||||| ||||| ||| |||||    
T  18395872 tatgaataatcaactatagttagttgataggtaaactatagttaataggttggt 18395819  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 417 - 461
Target Start/End: Original strand, 18656107 - 18656151
Alignment:
Q  417 taatcaactatagttaattgataggtaaactagagttagtagctt 461  Q
    |||||||||||||||| ||||||| ||||||||||||||||||||    
T  18656107 taatcaactatagttagttgatagctaaactagagttagtagctt 18656151  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 417 - 464
Target Start/End: Complemental strand, 23566581 - 23566534
Alignment:
Q  417 taatcaactatagttaattgataggtaaactagagttagtagcttggt 464  Q
    |||||||||||||||| |||||| |||||||||| |||||||||||||    
T  23566581 taatcaactatagttagttgataagtaaactagacttagtagcttggt 23566534  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 417 - 464
Target Start/End: Original strand, 52518758 - 52518805
Alignment:
Q  417 taatcaactatagttaattgataggtaaactagagttagtagcttggt 464  Q
    |||||||||||||||| |||||| |||||||||||||||||| |||||    
T  52518758 taatcaactatagttagttgataagtaaactagagttagtagtttggt 52518805  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 417 - 464
Target Start/End: Original strand, 52520600 - 52520647
Alignment:
Q  417 taatcaactatagttaattgataggtaaactagagttagtagcttggt 464  Q
    |||||||||||||||| |||||| |||||||||||||||||| |||||    
T  52520600 taatcaactatagttagttgataagtaaactagagttagtagtttggt 52520647  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 417 - 462
Target Start/End: Complemental strand, 3274672 - 3274627
Alignment:
Q  417 taatcaactatagttaattgataggtaaactagagttagtagcttg 462  Q
    |||||||||||| ||| ||||||||||||| ||||||||| |||||    
T  3274672 taatcaactataattagttgataggtaaacaagagttagtggcttg 3274627  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 54; Significance: 8e-22; HSPs: 13)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 54; E-Value: 8e-22
Query Start/End: Original strand, 403 - 464
Target Start/End: Original strand, 33869231 - 33869292
Alignment:
Q  403 tattagaatatgaataatcaactatagttaattgataggtaaactagagttagtagcttggt 464  Q
    ||||||| |||||||||||||||||||||| |||||||||||||||||||||||||||||||    
T  33869231 tattagagtatgaataatcaactatagttagttgataggtaaactagagttagtagcttggt 33869292  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 401 - 463
Target Start/End: Original strand, 15866563 - 15866625
Alignment:
Q  401 cttattagaatatgaataatcaactatagttaattgataggtaaactagagttagtagcttgg 463  Q
    ||||||||| |||||||||||||||||||||| ||||||||||||||||||||| ||||||||    
T  15866563 cttattagagtatgaataatcaactatagttagttgataggtaaactagagttaatagcttgg 15866625  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 403 - 464
Target Start/End: Original strand, 15868377 - 15868438
Alignment:
Q  403 tattagaatatgaataatcaactatagttaattgataggtaaactagagttagtagcttggt 464  Q
    ||||||| |||||||||||||||||||||| ||||||||||||||||||||| |||||||||    
T  15868377 tattagagtatgaataatcaactatagttagttgataggtaaactagagttaatagcttggt 15868438  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 403 - 464
Target Start/End: Original strand, 32079895 - 32079956
Alignment:
Q  403 tattagaatatgaataatcaactatagttaattgataggtaaactagagttagtagcttggt 464  Q
    ||||||| |||||||||||||||||||||| |||||||||||||||||||||| ||||||||    
T  32079895 tattagagtatgaataatcaactatagttagttgataggtaaactagagttagaagcttggt 32079956  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 403 - 464
Target Start/End: Original strand, 33866084 - 33866145
Alignment:
Q  403 tattagaatatgaataatcaactatagttaattgataggtaaactagagttagtagcttggt 464  Q
    ||||||| ||| |||||||||||||||||| |||||||||||||||||||||||||||||||    
T  33866084 tattagagtattaataatcaactatagttagttgataggtaaactagagttagtagcttggt 33866145  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 402 - 461
Target Start/End: Original strand, 14611068 - 14611127
Alignment:
Q  402 ttattagaatatgaataatcaactatagttaattgataggtaaactagagttagtagctt 461  Q
    |||||||| ||||||||||||||||| |||| |||||||||||| |||||||||||||||    
T  14611068 ttattagagtatgaataatcaactatggttagttgataggtaaattagagttagtagctt 14611127  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 403 - 464
Target Start/End: Original strand, 14620496 - 14620557
Alignment:
Q  403 tattagaatatgaataatcaactatagttaattgataggtaaactagagttagtagcttggt 464  Q
    ||||||| |||||||||||||||||  ||| ||||||||||||||| |||||||||||||||    
T  14620496 tattagagtatgaataatcaactatgattagttgataggtaaactacagttagtagcttggt 14620557  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 417 - 464
Target Start/End: Original strand, 5376876 - 5376923
Alignment:
Q  417 taatcaactatagttaattgataggtaaactagagttagtagcttggt 464  Q
    |||||||||||||||| |||||| |||||||||||||||||| |||||    
T  5376876 taatcaactatagttagttgataagtaaactagagttagtagtttggt 5376923  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 417 - 464
Target Start/End: Original strand, 5378731 - 5378778
Alignment:
Q  417 taatcaactatagttaattgataggtaaactagagttagtagcttggt 464  Q
    |||||||||||||||| |||||| |||||||||||||||||| |||||    
T  5378731 taatcaactatagttagttgataagtaaactagagttagtagtttggt 5378778  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 417 - 464
Target Start/End: Complemental strand, 15149277 - 15149230
Alignment:
Q  417 taatcaactatagttaattgataggtaaactagagttagtagcttggt 464  Q
    |||||||||||||||| |||||| ||||||||| || |||||||||||    
T  15149277 taatcaactatagttagttgataagtaaactagggtcagtagcttggt 15149230  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 417 - 464
Target Start/End: Complemental strand, 19645532 - 19645485
Alignment:
Q  417 taatcaactatagttaattgataggtaaactagagttagtagcttggt 464  Q
    ||||||| |||||||| |||||| |||||||| |||||||||||||||    
T  19645532 taatcaattatagttagttgataagtaaactaaagttagtagcttggt 19645485  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 419 - 461
Target Start/End: Complemental strand, 1088883 - 1088841
Alignment:
Q  419 atcaactatagttaattgataggtaaactagagttagtagctt 461  Q
    |||||||||||||| |||||| ||||| |||||||||||||||    
T  1088883 atcaactatagttagttgataagtaaattagagttagtagctt 1088841  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 417 - 461
Target Start/End: Complemental strand, 28884487 - 28884443
Alignment:
Q  417 taatcaactatagttaattgataggtaaactagagttagtagctt 461  Q
    |||||| ||||||||| ||||||||| |||||||||||| |||||    
T  28884487 taatcagctatagttagttgataggttaactagagttagaagctt 28884443  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 54; Significance: 8e-22; HSPs: 13)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 54; E-Value: 8e-22
Query Start/End: Original strand, 403 - 464
Target Start/End: Original strand, 3282786 - 3282847
Alignment:
Q  403 tattagaatatgaataatcaactatagttaattgataggtaaactagagttagtagcttggt 464  Q
    ||||||| |||||||||||||||||||||| |||||||||||||||||||||||||||||||    
T  3282786 tattagagtatgaataatcaactatagttagttgataggtaaactagagttagtagcttggt 3282847  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 54; E-Value: 8e-22
Query Start/End: Original strand, 403 - 464
Target Start/End: Original strand, 3284487 - 3284548
Alignment:
Q  403 tattagaatatgaataatcaactatagttaattgataggtaaactagagttagtagcttggt 464  Q
    ||||||| |||||||||||||||||||||| |||||||||||||||||||||||||||||||    
T  3284487 tattagagtatgaataatcaactatagttagttgataggtaaactagagttagtagcttggt 3284548  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 54; E-Value: 8e-22
Query Start/End: Original strand, 403 - 464
Target Start/End: Original strand, 9312014 - 9312075
Alignment:
Q  403 tattagaatatgaataatcaactatagttaattgataggtaaactagagttagtagcttggt 464  Q
    ||||||| |||||||||||||||||||||| |||||||||||||||||||||||||||||||    
T  9312014 tattagagtatgaataatcaactatagttagttgataggtaaactagagttagtagcttggt 9312075  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 54; E-Value: 8e-22
Query Start/End: Original strand, 403 - 464
Target Start/End: Complemental strand, 37664801 - 37664740
Alignment:
Q  403 tattagaatatgaataatcaactatagttaattgataggtaaactagagttagtagcttggt 464  Q
    ||||||| |||||||||||||||||||||| |||||||||||||||||||||||||||||||    
T  37664801 tattagagtatgaataatcaactatagttagttgataggtaaactagagttagtagcttggt 37664740  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 54; E-Value: 8e-22
Query Start/End: Original strand, 403 - 464
Target Start/End: Complemental strand, 37674523 - 37674462
Alignment:
Q  403 tattagaatatgaataatcaactatagttaattgataggtaaactagagttagtagcttggt 464  Q
    ||||||| |||||||||||||||||||||| |||||||||||||||||||||||||||||||    
T  37674523 tattagagtatgaataatcaactatagttagttgataggtaaactagagttagtagcttggt 37674462  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 54; E-Value: 8e-22
Query Start/End: Original strand, 403 - 464
Target Start/End: Original strand, 37702171 - 37702232
Alignment:
Q  403 tattagaatatgaataatcaactatagttaattgataggtaaactagagttagtagcttggt 464  Q
    ||||||| |||||||||||||||||||||| |||||||||||||||||||||||||||||||    
T  37702171 tattagagtatgaataatcaactatagttagttgataggtaaactagagttagtagcttggt 37702232  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 402 - 464
Target Start/End: Original strand, 902061 - 902123
Alignment:
Q  402 ttattagaatatgaataatcaactatagttaattgataggtaaactagagttagtagcttggt 464  Q
    |||||| |||||||||||||| ||||||||| |||||||||||||||||||||||||||||||    
T  902061 ttattataatatgaataatcatctatagttagttgataggtaaactagagttagtagcttggt 902123  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 403 - 464
Target Start/End: Original strand, 9310397 - 9310458
Alignment:
Q  403 tattagaatatgaataatcaactatagttaattgataggtaaactagagttagtagcttggt 464  Q
    ||||||| |||||||||||||||||||||| |||||| ||||||||||||||||||||||||    
T  9310397 tattagagtatgaataatcaactatagttagttgataagtaaactagagttagtagcttggt 9310458  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 403 - 464
Target Start/End: Complemental strand, 5925020 - 5924959
Alignment:
Q  403 tattagaatatgaataatcaactatagttaattgataggtaaactagagttagtagcttggt 464  Q
    ||||||| |||||||||||||||||||||| |||||||||||| |||||||||||| |||||    
T  5925020 tattagagtatgaataatcaactatagttagttgataggtaaattagagttagtagtttggt 5924959  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 417 - 464
Target Start/End: Complemental strand, 16808811 - 16808764
Alignment:
Q  417 taatcaactatagttaattgataggtaaactagagttagtagcttggt 464  Q
    |||||||||||||||| |||||| |||||||||||||||||| |||||    
T  16808811 taatcaactatagttagttgataagtaaactagagttagtagtttggt 16808764  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 417 - 464
Target Start/End: Original strand, 48940675 - 48940722
Alignment:
Q  417 taatcaactatagttaattgataggtaaactagagttagtagcttggt 464  Q
    |||||||||||||||| |||||| |||||||||||||||||| |||||    
T  48940675 taatcaactatagttagttgataagtaaactagagttagtagtttggt 48940722  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 417 - 461
Target Start/End: Original strand, 17449310 - 17449354
Alignment:
Q  417 taatcaactatagttaattgataggtaaactagagttagtagctt 461  Q
    |||||||||||||||| |||||| ||||||||| |||||||||||    
T  17449310 taatcaactatagttagttgataagtaaactagggttagtagctt 17449354  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 411 - 456
Target Start/End: Original strand, 36580555 - 36580600
Alignment:
Q  411 tatgaataatcaactatagttaattgataggtaaactagagttagt 456  Q
    ||||||||||| ||||||| || ||||||||| |||||||||||||    
T  36580555 tatgaataatctactatagatagttgataggttaactagagttagt 36580600  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0006 (Bit Score: 51; Significance: 5e-20; HSPs: 1)
Name: scaffold0006
Description:

Target: scaffold0006; HSP #1
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 402 - 464
Target Start/End: Original strand, 39129 - 39191
Alignment:
Q  402 ttattagaatatgaataatcaactatagttaattgataggtaaactagagttagtagcttggt 464  Q
    |||||||| |||||||||||||||||||||| |||||| ||||||||||||||||||||||||    
T  39129 ttattagagtatgaataatcaactatagttagttgataagtaaactagagttagtagcttggt 39191  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 51; Significance: 5e-20; HSPs: 8)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 402 - 464
Target Start/End: Complemental strand, 37405697 - 37405635
Alignment:
Q  402 ttattagaatatgaataatcaactatagttaattgataggtaaactagagttagtagcttggt 464  Q
    |||||||| |||||||||||||||||||||| ||||||| |||||||||||||||||||||||    
T  37405697 ttattagagtatgaataatcaactatagttagttgatagataaactagagttagtagcttggt 37405635  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 401 - 464
Target Start/End: Complemental strand, 25472019 - 25471956
Alignment:
Q  401 cttattagaatatgaataatcaactatagttaattgataggtaaactagagttagtagcttggt 464  Q
    ||||||| | |||||||||| ||||||||||| ||||||||| ||||||||||||||| |||||    
T  25472019 cttattatagtatgaataattaactatagttagttgataggttaactagagttagtaggttggt 25471956  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 417 - 464
Target Start/End: Original strand, 4895583 - 4895630
Alignment:
Q  417 taatcaactatagttaattgataggtaaactagagttagtagcttggt 464  Q
    |||||||||||||||| |||||| |||||||||||||||||| |||||    
T  4895583 taatcaactatagttagttgataagtaaactagagttagtagtttggt 4895630  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 417 - 464
Target Start/End: Complemental strand, 20046729 - 20046682
Alignment:
Q  417 taatcaactatagttaattgataggtaaactagagttagtagcttggt 464  Q
    |||||||||||||||| |||||| |||||||||||||||||| |||||    
T  20046729 taatcaactatagttagttgataagtaaactagagttagtagtttggt 20046682  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 417 - 464
Target Start/End: Complemental strand, 28124820 - 28124773
Alignment:
Q  417 taatcaactatagttaattgataggtaaactagagttagtagcttggt 464  Q
    |||||||||||||||| |||||| |||||||||||||||||| |||||    
T  28124820 taatcaactatagttagttgataagtaaactagagttagtagtttggt 28124773  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 417 - 464
Target Start/End: Complemental strand, 28126647 - 28126600
Alignment:
Q  417 taatcaactatagttaattgataggtaaactagagttagtagcttggt 464  Q
    |||||||||||||||| |||||| |||||||||||||||||| |||||    
T  28126647 taatcaactatagttagttgataagtaaactagagttagtagtttggt 28126600  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 417 - 464
Target Start/End: Original strand, 44963162 - 44963209
Alignment:
Q  417 taatcaactatagttaattgataggtaaactagagttagtagcttggt 464  Q
    |||||||||||||||| |||||| ||||||||| ||||||||||||||    
T  44963162 taatcaactatagttagttgataagtaaactagggttagtagcttggt 44963209  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 415 - 451
Target Start/End: Original strand, 26736794 - 26736830
Alignment:
Q  415 aataatcaactatagttaattgataggtaaactagag 451  Q
    |||||||||||||||||||||||||||| ||||||||    
T  26736794 aataatcaactatagttaattgataggttaactagag 26736830  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0057 (Bit Score: 50; Significance: 2e-19; HSPs: 1)
Name: scaffold0057
Description:

Target: scaffold0057; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 403 - 464
Target Start/End: Original strand, 58771 - 58832
Alignment:
Q  403 tattagaatatgaataatcaactatagttaattgataggtaaactagagttagtagcttggt 464  Q
    |||||||||||||||||||||||||||||| ||  |||||||||||||||||||||||||||    
T  58771 tattagaatatgaataatcaactatagttagttagtaggtaaactagagttagtagcttggt 58832  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 50; Significance: 2e-19; HSPs: 8)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 403 - 464
Target Start/End: Original strand, 14935562 - 14935623
Alignment:
Q  403 tattagaatatgaataatcaactatagttaattgataggtaaactagagttagtagcttggt 464  Q
    ||||||| |||||||||||||||||||||| |||||||||||||||||||||||| ||||||    
T  14935562 tattagagtatgaataatcaactatagttagttgataggtaaactagagttagtaacttggt 14935623  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 417 - 464
Target Start/End: Original strand, 30224229 - 30224276
Alignment:
Q  417 taatcaactatagttaattgataggtaaactagagttagtagcttggt 464  Q
    |||||||||||||||| |||||| ||||||||||||||||||||||||    
T  30224229 taatcaactatagttagttgataagtaaactagagttagtagcttggt 30224276  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 417 - 461
Target Start/End: Original strand, 5567425 - 5567469
Alignment:
Q  417 taatcaactatagttaattgataggtaaactagagttagtagctt 461  Q
    |||||||||||||||| ||||||| ||||||||||||||||||||    
T  5567425 taatcaactatagttagttgatagctaaactagagttagtagctt 5567469  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 417 - 464
Target Start/End: Complemental strand, 3375655 - 3375608
Alignment:
Q  417 taatcaactatagttaattgataggtaaactagagttagtagcttggt 464  Q
    |||||||||||||||| |||||| ||||||||| ||||||||||||||    
T  3375655 taatcaactatagttagttgataagtaaactagggttagtagcttggt 3375608  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 417 - 464
Target Start/End: Complemental strand, 31032231 - 31032184
Alignment:
Q  417 taatcaactatagttaattgataggtaaactagagttagtagcttggt 464  Q
    |||||||||||||||| |||||| ||||||||| ||||||||||||||    
T  31032231 taatcaactatagttagttgataagtaaactagggttagtagcttggt 31032184  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 417 - 458
Target Start/End: Complemental strand, 3379346 - 3379305
Alignment:
Q  417 taatcaactatagttaattgataggtaaactagagttagtag 458  Q
    |||||||||||||||| ||||||| |||||||||||||||||    
T  3379346 taatcaactatagttagttgatagttaaactagagttagtag 3379305  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 417 - 464
Target Start/End: Original strand, 25249002 - 25249052
Alignment:
Q  417 taatcaactatagttaattgatag---gtaaactagagttagtagcttggt 464  Q
    |||||||||||||||||||||||    ||||||||||||||||||||||||    
T  25249002 taatcaactatagttaattgataataagtaaactagagttagtagcttggt 25249052  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 417 - 457
Target Start/End: Original strand, 6428739 - 6428779
Alignment:
Q  417 taatcaactatagttaattgataggtaaactagagttagta 457  Q
    |||||||||||| ||| |||||| |||||||||||||||||    
T  6428739 taatcaactataattagttgataagtaaactagagttagta 6428779  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 36; Significance: 0.00000000004; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 417 - 464
Target Start/End: Complemental strand, 17403015 - 17402968
Alignment:
Q  417 taatcaactatagttaattgataggtaaactagagttagtagcttggt 464  Q
    |||||||||||||||| |||||| |||||||||||||||||| |||||    
T  17403015 taatcaactatagttagttgataagtaaactagagttagtagtttggt 17402968  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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