View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18106_low_8 (Length: 427)
Name: NF18106_low_8
Description: NF18106
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18106_low_8 |
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Alignment Details
Target: chr2 (Bit Score: 235; Significance: 1e-130; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 235; E-Value: 1e-130
Query Start/End: Original strand, 18 - 406
Target Start/End: Complemental strand, 17268665 - 17268294
Alignment:
| Q |
18 |
actttgttaaaataaaataaaat-ttgaagctctatttaaattttaaagttgaaataacaatcaaaacaattataatatannnnnnngacaaaaacacaa |
116 |
Q |
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| T |
17268665 |
actttcttaaaaaaaaataaaaaattgaagctctatttaaattttaaagttgaaataacaatcaaaacaattataatat---tttttgacaaaaacacaa |
17268569 |
T |
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| Q |
117 |
ttataatattaaaagcgtttttctgagtttccgtatttgggtatgacactaatgacataattagagatcaaatttttctttatccatctaaattttcatt |
216 |
Q |
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| T |
17268568 |
ttataatattaaaagcgtttttctgagtttccgtatttgggtatgacactaatgacataattagagatcaattttttctttatccatctaaattttcatt |
17268469 |
T |
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| Q |
217 |
gttatttcaannnnnnnnacagcgcatgtaaacaatatttgaaaaaattacatttgaaaaaattactaagtattttataaactataagacttgatattaa |
316 |
Q |
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| T |
17268468 |
gttatttcaattttttttacggtgcatgtaaacaatatttgaaaaaattac---------------taaatattttataaactataagacttgatattaa |
17268384 |
T |
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| Q |
317 |
taaatgagaggacacgaatattataatggatcaaattagatgaaagacaaacataggtattctccttctgaaactctagccatcactcat |
406 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||| || |||||||| |
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| T |
17268383 |
taaatgagaggacacgaatattataatggatcaaattagatgaaagacaaacataggtattctccttctcaaaccctaaccgtcactcat |
17268294 |
T |
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