View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18106_low_9 (Length: 422)
Name: NF18106_low_9
Description: NF18106
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18106_low_9 |
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Alignment Details
Target: chr5 (Bit Score: 353; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 353; E-Value: 0
Query Start/End: Original strand, 14 - 404
Target Start/End: Original strand, 43408700 - 43409096
Alignment:
| Q |
14 |
gaatatcccacaagcagtaaaggtaa---gcaaacaatca---tcagatcatagtactggatttgattaaatcaacaaaaactaaataaaattgtttcta |
107 |
Q |
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| T |
43408700 |
gaatatcccacaagcagtaaaggtaattagcaaacaatcatcatcagatcatagtactggatttgattagatcaacaaaaactatataaaattgtttcta |
43408799 |
T |
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| Q |
108 |
aaaatgatatgataatgaataattaggtatttgaagagctatatgaagcagccgtgaacgagataatggaagtgttggcttcagtgtgcaagacgcacaa |
207 |
Q |
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| T |
43408800 |
aaaatgatatgataatgaataattaggtatttgaagagctatatgaagcagcggtgaacgagataatggaagtgttggcgtcagtgtgcaagacgcacaa |
43408899 |
T |
|
| Q |
208 |
tttaccattagcactaacatgggctccttgcctacaacaacaacaaggaggaggaaagggaagtagtggtgcatcaggttgtggtgtttcaactatgagt |
307 |
Q |
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| T |
43408900 |
tttaccattagcactaacatgggctccttgcctacaacaacaacaaggaggaggaaagggaagtagtggtgcatcaggttgtggtgtttcaactatgagt |
43408999 |
T |
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| Q |
308 |
tgctgcatatcaacggttgattcagcttgttatgttggtgacatggatgtattgggattccaagaagcgtgcagtgagtatcacctttttaatggac |
404 |
Q |
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| T |
43409000 |
tgctgcatatcaacggttgattcagcttgttatgttggtgacatggatgtattgggattccaagaagcgtgcagtgagtatcacctttttaatggac |
43409096 |
T |
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