View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18107_high_11 (Length: 541)
Name: NF18107_high_11
Description: NF18107
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18107_high_11 |
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Alignment Details
Target: chr1 (Bit Score: 481; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 481; E-Value: 0
Query Start/End: Original strand, 1 - 526
Target Start/End: Complemental strand, 1792637 - 1792112
Alignment:
| Q |
1 |
aggatggaaattgtgtctccaatgatgttgctttgtcactgttggccataatgtcattacaccagccaatgcactgcaagctctgaaatatataaataag |
100 |
Q |
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| T |
1792637 |
aggatggaaattgtgtctccaatgatgttgctctgtcactgttggccataatgtcattacaccagccaatgcactgcaagctctgaaataaataaataag |
1792538 |
T |
|
| Q |
101 |
atgattgagtttcaataaatnnnnnnngttaaaatttttctattttgaatagatatacgaaatgacaataatcacttgaaaagtcacgcacgtacgtgaa |
200 |
Q |
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| T |
1792537 |
atgattgagtttcaataaagaaaaaaagttaaaatttttctattttgaatagatatacgaaatgacaataatcacttgaaaagtcacgcacgtacgtgaa |
1792438 |
T |
|
| Q |
201 |
gaaatcagagatttgaactagatcacggcgttcgatctaacgatttcgacattttgattatttgagttgggactcgtgaacttaaaatattttttaatta |
300 |
Q |
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|||||||||||||||||| |||||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1792437 |
gaaatcagagatttgaaccagatcacgacgttcgacctaacgatttcgacattttgattatttgagttgggactcgtgaacttaaaatattttttaatta |
1792338 |
T |
|
| Q |
301 |
aggctttacttgtgcacttaaaataggaaataatgacctttatagatagatacaaaacaatgataagagtcttggatttgagaaacttacaaagctatga |
400 |
Q |
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| T |
1792337 |
aggctttacttgtgcacttaaaataggaaataatgacctttatagatagatacaaaacaatgataagagtcttggatttgagaaacttacaaagctatga |
1792238 |
T |
|
| Q |
401 |
tgaagaagacagataaagttgtgtatttgaacaaggctgaaggaggaaccgatgtaccattgtatgagtaaaatatagatatcaaacccattaaagatga |
500 |
Q |
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| T |
1792237 |
tgaagaagacagataaagttgtgtatttgaacaaggctgaaggaggaaccgatgtaccattgtatgagtaaaatatagatatcaaacccattaaagatga |
1792138 |
T |
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| Q |
501 |
tgccactaaaaatcctatagaagaat |
526 |
Q |
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| T |
1792137 |
tgccactaaaaatcctatagaagaat |
1792112 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 87; Significance: 2e-41; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 87; E-Value: 2e-41
Query Start/End: Original strand, 338 - 524
Target Start/End: Original strand, 29621156 - 29621341
Alignment:
| Q |
338 |
ctttatagatagatacaaaacaatgataagagtcttggatttgagaaacttacaaagctatgatgaagaagacagataaagttgtgtatttgaacaaggc |
437 |
Q |
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|||||||| |||| ||| | |||| |||||||| ||||||||||||| |||||||||| | || ||||||| || ||||||||||||||| |||||||| |
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| T |
29621156 |
ctttataggtagaaacatagcaatcataagagtgttggatttgagaa-cttacaaagccaagaccaagaagatagttaaagttgtgtatttcaacaaggc |
29621254 |
T |
|
| Q |
438 |
tgaaggaggaaccgatgtaccattgtatgagtaaaatatagatatcaaacccattaaagatgatgccactaaaaatcctatagaaga |
524 |
Q |
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|||||||||||| ||||||||||||||||| ||||||| |||||||||||||| ||||||||||||| | ||| |||| |||||| |
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| T |
29621255 |
tgaaggaggaactgatgtaccattgtatgaataaaatagcgatatcaaacccatgcaagatgatgccacgagaaaccctaaagaaga |
29621341 |
T |
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