View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF18107_high_12 (Length: 537)
Name: NF18107_high_12
Description: NF18107
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18107_high_12 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 503; Significance: 0; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 503; E-Value: 0
Query Start/End: Original strand, 1 - 519
Target Start/End: Complemental strand, 35850844 - 35850326
Alignment:
| Q |
1 |
gatcaagaggaatcacaagatgtgatggacgatgattctagggattcctgttctgatgctgagacgccggttgaattgcctgtggcattagaattgccgc |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
35850844 |
gatcaagaggaatcacaagatgtgatggacgatgattctagggattcctgttctgatgctgagacgccggttgaattgcctgtggcattagaattgccgc |
35850745 |
T |
|
| Q |
101 |
caccgttagagttgccgccgtcttctggaactattggtgtgccagagaagtatgtttcgtacttgttttcggtatatggattcttacgctcgttcagtat |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
35850744 |
caccgttagagttgccgccgtcttctggaactattggtgtgccagagaagtatgtttcgtacttgttttcggtatatggattcttacgctcgttcagtat |
35850645 |
T |
|
| Q |
201 |
tcgattgtttctttatccgtttagtttggatgatttcgtcggtgcccttaactgtcgggttcctaatacgctgcttgatgctgttcataattctttaatg |
300 |
Q |
| |
|
|| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
35850644 |
tcaattgtttctttatccgtttagtttggatgatttcgtcggtgcccttaactgtcgggttcctaatacgctgcttgatgctgttcataattctttaatg |
35850545 |
T |
|
| Q |
301 |
cgtgctttgagacgtcatcttgaacatcttgcatttgagggatcgaagattgcatcgagatgccttaggtattatgcttctacctacttaggttaatttt |
400 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
|
|
| T |
35850544 |
cgtgctttgagacgtcatcttgaacatcttgcatttgagggatcgaagattgcatcgagatgcctaaggtattatgcttctacctacttaggttaatttt |
35850445 |
T |
|
| Q |
401 |
ttatttatatactgttgactgttttgtttgcattagagctttgaaccctatttcattaaaaacaggacatcaagtaatacacacatacatacgtgtttgt |
500 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||| |
|
|
| T |
35850444 |
ttatttatatactgttgactgttttgtttgcattagagctttgaaccctattccattaaaaacaggacatcaagtaatacacacatacatacgtgtgtgt |
35850345 |
T |
|
| Q |
501 |
tttgattaacccatatttc |
519 |
Q |
| |
|
||||||||||||||||||| |
|
|
| T |
35850344 |
tttgattaacccatatttc |
35850326 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 267; E-Value: 1e-149
Query Start/End: Original strand, 1 - 465
Target Start/End: Complemental strand, 35841227 - 35840766
Alignment:
| Q |
1 |
gatcaagaggaatcacaagatgtgatggacgatgattctagggattcctgttctgatgctgagacgccggttgaattgcctgtggcattagaattgccgc |
100 |
Q |
| |
|
||||||||||| |||| |||||| |||||||||||||||||||||| ||||| |||||||||| ||||||||||||| ||||||| ||||||| ||| |
|
|
| T |
35841227 |
gatcaagaggattcacgagatgttatggacgatgattctagggatttgtgttcggatgctgagataccggttgaattgctggtggcatcagaattgtcgc |
35841128 |
T |
|
| Q |
101 |
caccgttagagttgccgccgtcttctggaactattggtgtgccagagaagtatgtttcgtacttgttttcggtatatggattcttacgctcgttcagtat |
200 |
Q |
| |
|
| || || ||||| ||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| || |||||||| |
|
|
| T |
35841127 |
cgcctttggagttaccgccgtcttcaggaactattggtgtgccggagaagtatgtttcgtacttgttttcggtatatggattcttacgatcattcagtat |
35841028 |
T |
|
| Q |
201 |
tcgattgtttctttatccgtttagtttggatgatttcgtcggtgcccttaactgtcgggttcctaatacgctgcttgatgctgttcataattctttaatg |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| || ||||||||||| ||||| |||||| || |||||||||||||||||||||||||| |
|
|
| T |
35841027 |
tcgattgtttctttatccgtttagtttggatgatttcgtcggggctcttaactgtcgagttccaaatacgttggttgatgctgttcataattctttaatg |
35840928 |
T |
|
| Q |
301 |
cgtgctttgagacgtcatcttgaacatcttgcatttgagggatcgaagattgcatcgagatgccttaggtattatgcttctacctacttaggttaatttt |
400 |
Q |
| |
|
|||||| ||||||||||||||||||||||||||| ||||||||| | | ||||||| |||||||||||||||||||||| ||| || |||||||||| |
|
|
| T |
35840927 |
cgtgctctgagacgtcatcttgaacatcttgcatctgagggatcaacggttgcatctcaatgccttaggtattatgcttcttcctcctcaggttaattta |
35840828 |
T |
|
| Q |
401 |
ttatttatatactgttgactgttttgtttgcattagagctttgaaccctatttcattaaaaacag |
465 |
Q |
| |
|
| || |||| ||||||||||||||| | |||||||||| | ||| ||||| |||||||||||| |
|
|
| T |
35840827 |
tgat---tatattgttgactgttttgtgtacattagagctctaaactctattccattaaaaacag |
35840766 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 31; Significance: 0.00000005; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 479 - 517
Target Start/End: Complemental strand, 44384843 - 44384805
Alignment:
| Q |
479 |
acacacatacatacgtgtttgttttgattaacccatatt |
517 |
Q |
| |
|
|||||||||||||||||| ||||||||| |||||||||| |
|
|
| T |
44384843 |
acacacatacatacgtgtgtgttttgatcaacccatatt |
44384805 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University