View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18107_high_13 (Length: 520)
Name: NF18107_high_13
Description: NF18107
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18107_high_13 |
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Alignment Details
Target: chr4 (Bit Score: 443; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 443; E-Value: 0
Query Start/End: Original strand, 7 - 504
Target Start/End: Original strand, 53984254 - 53984752
Alignment:
| Q |
7 |
tgagatgaatggctaaaaagaaaccaaaaagggaggaaattaagtaagatatatgatgagaataataggagacgtgagtaaaaatcatgcatgttgaaaa |
106 |
Q |
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| T |
53984254 |
tgagaagaatggctaaaaagaaaccaaaaagggaggaaattaagtaagatatatgatgagaataataggagacgtgagtaaaaatcatgcatgttgaaaa |
53984353 |
T |
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| Q |
107 |
agtnnnnnnnnnnnn-ttacaaacataatattattccctccacacccggaaggaaagaaaccctgcaagttcaccccttttgtgggtcgatttctttctc |
205 |
Q |
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||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
53984354 |
agtaaaaaaaaaaaaattacaaacataatattattccctccacacccggaaggaaagaaaccctgcaagttcaccccttttgtgggtcgatttctttctc |
53984453 |
T |
|
| Q |
206 |
tagcctaaatataaaacatggattattttttggtggttagagaaattacttttaagattcattcgacccctttttagtctagtgccaataattaaatcct |
305 |
Q |
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||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
53984454 |
tagcctaaatataaaacatggattattttttggtgcttagagaaattacttttaagattcattcgacccctttttagtctagtgccaataattaaatcct |
53984553 |
T |
|
| Q |
306 |
actataccccatacaagttggacaagcaccttaagattgtgactttagcttcaagtagatgtatgtatttttcaatactatggaacaaattgtttgcgtc |
405 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
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| T |
53984554 |
actataccccatacaagttggacaagcaccttaagattgtgactttagcttcaagtagatgtatgtatttttcaatactatggaacaaattgtttgtgtc |
53984653 |
T |
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| Q |
406 |
caatccctgcaagctccctggtacagtcccttgaagttctcgaagtttcttttgcaaggaagtttttccaacattggcattctttgccaaacatacttt |
504 |
Q |
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| T |
53984654 |
caatccctgcaagctccctggtacagtcccttgaagttctcgaagtttcttttgcaaggaagtttttccaacattggcattctttgccaaacatacttt |
53984752 |
T |
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