View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18107_high_17 (Length: 449)
Name: NF18107_high_17
Description: NF18107
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18107_high_17 |
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Alignment Details
Target: chr5 (Bit Score: 379; Significance: 0; HSPs: 5)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 379; E-Value: 0
Query Start/End: Original strand, 11 - 434
Target Start/End: Complemental strand, 12040818 - 12040393
Alignment:
| Q |
11 |
cacagacaaatatcataacatcacaagaaattgatcatgaacaaacaaatagcataacattacaagaaattgatcatgaaagtagaattaataaaattac |
110 |
Q |
| |
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|||| |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
12040818 |
cacaaacaaatatcataacatcacaagaaattgatcatgaacaaacaaatagcttaacattacaagaaattgatcatgaaagtagaattaataaaattac |
12040719 |
T |
|
| Q |
111 |
aattcaactgaacctgcggttactagctaattacttaccccata--catgcacgtcccttaagaagtttccttggcatgtataatatttttgatatgctt |
208 |
Q |
| |
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|||||||||| |||||||||| |||||||||||||||||||||| |||||| |||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
12040718 |
aattcaactggacctgcggtttctagctaattacttaccccataaacatgcaactcccttaagaagtttccttggcatgtataatatttttgatatgctt |
12040619 |
T |
|
| Q |
209 |
aatctgaggccaatcatcacccgtgtctggttgacaccttggcaataacaacgggcagtccctaataatcaaagtctgtagagactgtagcgtttccatt |
308 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
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| T |
12040618 |
aatctgaggccaatcatcacccgtgtctggttgacaccttggcaataacaacgggcagtccctaataatcaaagtctttagagactgtagcgtttccatt |
12040519 |
T |
|
| Q |
309 |
cctttgggcagagaatctaactttctgcattccgaaagaaccagtttttcaagtgaagtgaagttgcgtatgctttccgggagagaagttaaaccctggc |
408 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||| |
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| T |
12040518 |
cctttgggcagagaatctaactttctgcattccgaaagaaccagtttttcaagtgaagcgaagttgcatatgctttccgggagagaagttaaaccctggc |
12040419 |
T |
|
| Q |
409 |
aatcataaagccttaagacttgtaaa |
434 |
Q |
| |
|
|||||||||||||||||||||||||| |
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| T |
12040418 |
aatcataaagccttaagacttgtaaa |
12040393 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 126; E-Value: 8e-65
Query Start/End: Original strand, 216 - 425
Target Start/End: Complemental strand, 11861816 - 11861607
Alignment:
| Q |
216 |
ggccaatcatcacccgtgtctggttgacaccttggcaataacaacgggcagtccctaataatcaaagtctgtagagactgtagcgtttccattcctttgg |
315 |
Q |
| |
|
|||||||||||||| ||||||||||||||||||||||||||||| ||||| ||| ||||||||||||| | |||||||| ||| ||||||||||||||| |
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| T |
11861816 |
ggccaatcatcacctgtgtctggttgacaccttggcaataacaaagggcaatccataataatcaaagtatttagagactcaagcttttccattcctttgg |
11861717 |
T |
|
| Q |
316 |
gcagagaatctaactttctgcattccgaaagaaccagtttttcaagtgaagtgaagttgcgtatgctttccgggagagaagttaaaccctggcaatcata |
415 |
Q |
| |
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||||||||||||||||||||||||| |||||||||||||||||||||||||||| ||| | ||| ||||| || | | |||||||||| || |||||||| |
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| T |
11861716 |
gcagagaatctaactttctgcattcagaaagaaccagtttttcaagtgaagtgaggttacctatactttctggtaaaaaagttaaaccatgacaatcata |
11861617 |
T |
|
| Q |
416 |
aagccttaag |
425 |
Q |
| |
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|| ||||||| |
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|
| T |
11861616 |
aatccttaag |
11861607 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 119; E-Value: 1e-60
Query Start/End: Original strand, 195 - 417
Target Start/End: Complemental strand, 11829738 - 11829516
Alignment:
| Q |
195 |
tttttgatatgcttaatctgaggccaatcatcacccgtgtctggttgacaccttggcaataacaacgggcagtccctaataatcaaagtctgtagagact |
294 |
Q |
| |
|
||||||||||| ||| || |||||||||||||| ||||||||||||||||||||||||||||| ||||| ||| ||||||||||||| | |||||||| |
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|
| T |
11829738 |
tttttgatatgagcaatttgtggccaatcatcacctgtgtctggttgacaccttggcaataacaaagggcaatccataataatcaaagtatttagagact |
11829639 |
T |
|
| Q |
295 |
gtagcgtttccattcctttgggcagagaatctaactttctgcattccgaaagaaccagtttttcaagtgaagtgaagttgcgtatgctttccgggagaga |
394 |
Q |
| |
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| ||| |||||||||||||||| ||||||||||| ||||||||||| |||||||||||| ||||||||||||||| ||| | ||| ||||| || | ||| |
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| T |
11829638 |
gaagcatttccattcctttgggaagagaatctaaatttctgcattcagaaagaaccagtctttcaagtgaagtgaggttacctatactttctggtaaaga |
11829539 |
T |
|
| Q |
395 |
agttaaaccctggcaatcataaa |
417 |
Q |
| |
|
||||||||| || |||||||||| |
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|
| T |
11829538 |
agttaaaccatgacaatcataaa |
11829516 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 93; E-Value: 4e-45
Query Start/End: Original strand, 216 - 424
Target Start/End: Original strand, 11900702 - 11900910
Alignment:
| Q |
216 |
ggccaatcatcacccgtgtctggttgacaccttggcaataacaacgggcagtccctaataatcaaagtctgtagagactgtagcgtttccattcctttgg |
315 |
Q |
| |
|
|||||||||||||| ||||| ||||||||||||||||||||||| ||||| ||| ||||||||||||| | ||||||||||||| ||||||| || |||| |
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|
| T |
11900702 |
ggccaatcatcacctgtgtcgggttgacaccttggcaataacaaagggcaatccataataatcaaagtatttagagactgtagcatttccatccccttgg |
11900801 |
T |
|
| Q |
316 |
gcagagaatctaactttctgcattccgaaagaaccagtttttcaagtgaagtgaagttgcgtatgctttccgggagagaagttaaaccctggcaatcata |
415 |
Q |
| |
|
||||| ||||||| ||||||||||| |||| ||| ||||| |||| ||||||| ||| | ||||||||| | || ||||| ||| ||||||||||| |
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|
| T |
11900802 |
gcagataatctaaatttctgcattcagaaataactagtttgccaagggaagtgaggttacctatgctttctgttaggtcagttagaccatggcaatcata |
11900901 |
T |
|
| Q |
416 |
aagccttaa |
424 |
Q |
| |
|
||||||||| |
|
|
| T |
11900902 |
aagccttaa |
11900910 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 216 - 354
Target Start/End: Complemental strand, 11733506 - 11733368
Alignment:
| Q |
216 |
ggccaatcatcacccgtgtctggttgacaccttggcaataacaacgggcagtccctaataatcaaagtctgtagagactgtagcgtttccattcctttgg |
315 |
Q |
| |
|
||||||||||||||||| || ||||||||||||||||||||||| ||||||||| |||| ||||| || ||| ||| ||| || ||||||||||| |
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|
| T |
11733506 |
ggccaatcatcacccgtttcaggttgacaccttggcaataacaaggggcagtccataatgatcaaggtaaatagtgacgtgagctttatcattcctttgg |
11733407 |
T |
|
| Q |
316 |
gcagagaatctaactttctgcattccgaaagaaccagtt |
354 |
Q |
| |
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|||||||||| | |||||||||| ||||||||||||| |
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|
| T |
11733406 |
gcagagaatccatacttctgcattcagaaagaaccagtt |
11733368 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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