View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18107_high_18 (Length: 447)
Name: NF18107_high_18
Description: NF18107
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18107_high_18 |
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| [»] scaffold0119 (2 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 402; Significance: 0; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 402; E-Value: 0
Query Start/End: Original strand, 12 - 429
Target Start/End: Complemental strand, 37742681 - 37742264
Alignment:
| Q |
12 |
tcatcaaaggagtttttccaaccaatgcaccaactcctccaaacaccaacaatgcaaagctaaccacagcagcaacaacacccattctggttttgtgatt |
111 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37742681 |
tcatcaaaggagtttttccaaccaatgcaccaactcctccaaacaccaacaatgcaaagctaaccacagcagcaacaacacccattctggttttgtgatt |
37742582 |
T |
|
| Q |
112 |
ctttataaatgcagctgctagcaatggcatcactgcaccaatagaaaatgcaagtgctgatgctagggctgcttgaaatggatttggcaatttctccctt |
211 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37742581 |
ctttataaatgcagctgctagcaatggcatcactgcaccaatagaaaatgcaagtgctgatgctagggctgcttgaaatggatttggcaatttctccctt |
37742482 |
T |
|
| Q |
212 |
tcactactttcatcatcattgttattattattagcttctctttctctttttatctgagctatctcaatgtcatattgagtataaacagaaacaaactcac |
311 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37742481 |
tcactactttcatcatcattgttattattattagcttctctttctctttttatctgagctatctcaatgtcatattgagtataaacagaaacaaactcac |
37742382 |
T |
|
| Q |
312 |
caattgccatgctacaagcaccagcgactaaaccagcaaaaccagctaggagcattactttgatgtcttcttttatggctccaacaccaatcatcaacga |
411 |
Q |
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||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
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| T |
37742381 |
caattgccatgctacaagcaccagctactaaaccagcgaaaccagctaggagcattactttgatgtcttcttttatagctccaacaccaatcatcaacga |
37742282 |
T |
|
| Q |
412 |
cgcaacggtgattagtcc |
429 |
Q |
| |
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||||||||||||||||| |
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| T |
37742281 |
tgcaacggtgattagtcc |
37742264 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 402; E-Value: 0
Query Start/End: Original strand, 12 - 429
Target Start/End: Complemental strand, 37749751 - 37749334
Alignment:
| Q |
12 |
tcatcaaaggagtttttccaaccaatgcaccaactcctccaaacaccaacaatgcaaagctaaccacagcagcaacaacacccattctggttttgtgatt |
111 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37749751 |
tcatcaaaggagtttttccaaccaatgcaccaactcctccaaacaccaacaatgcaaagctaaccacagcagcaacaacacccattctggttttgtgatt |
37749652 |
T |
|
| Q |
112 |
ctttataaatgcagctgctagcaatggcatcactgcaccaatagaaaatgcaagtgctgatgctagggctgcttgaaatggatttggcaatttctccctt |
211 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37749651 |
ctttataaatgcagctgctagcaatggcatcactgcaccaatagaaaatgcaagtgctgatgctagggctgcttgaaatggatttggcaatttctccctt |
37749552 |
T |
|
| Q |
212 |
tcactactttcatcatcattgttattattattagcttctctttctctttttatctgagctatctcaatgtcatattgagtataaacagaaacaaactcac |
311 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37749551 |
tcactactttcatcatcattgttattattattagcttctctttctctttttatctgagctatctcaatgtcatattgagtataaacagaaacaaactcac |
37749452 |
T |
|
| Q |
312 |
caattgccatgctacaagcaccagcgactaaaccagcaaaaccagctaggagcattactttgatgtcttcttttatggctccaacaccaatcatcaacga |
411 |
Q |
| |
|
||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
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| T |
37749451 |
caattgccatgctacaagcaccagctactaaaccagcgaaaccagctaggagcattactttgatgtcttcttttatagctccaacaccaatcatcaacga |
37749352 |
T |
|
| Q |
412 |
cgcaacggtgattagtcc |
429 |
Q |
| |
|
||||||||||||||||| |
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| T |
37749351 |
tgcaacggtgattagtcc |
37749334 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 398; E-Value: 0
Query Start/End: Original strand, 12 - 429
Target Start/End: Original strand, 37752037 - 37752454
Alignment:
| Q |
12 |
tcatcaaaggagtttttccaaccaatgcaccaactcctccaaacaccaacaatgcaaagctaaccacagcagcaacaacacccattctggttttgtgatt |
111 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37752037 |
tcatcaaaggagtttttccaaccaatgcaccaactcctccaaacaccaacaatgcaaagctaaccacagcagcaacaacacccattctggttttgtgatt |
37752136 |
T |
|
| Q |
112 |
ctttataaatgcagctgctagcaatggcatcactgcaccaatagaaaatgcaagtgctgatgctagggctgcttgaaatggatttggcaatttctccctt |
211 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37752137 |
ctttataaatgcagctgctagcaatggcatcactgcaccaatagaaaatgcaagtgctgatgctagggctgcttgaaatggatttggcaatttctccctt |
37752236 |
T |
|
| Q |
212 |
tcactactttcatcatcattgttattattattagcttctctttctctttttatctgagctatctcaatgtcatattgagtataaacagaaacaaactcac |
311 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
37752237 |
tcactactttcatcatcattgttattattattagcttctctttctctttttatctgagctatctcaatgtcatattgagtataaacagaaacaaactcac |
37752336 |
T |
|
| Q |
312 |
caattgccatgctacaagcaccagcgactaaaccagcaaaaccagctaggagcattactttgatgtcttcttttatggctccaacaccaatcatcaacga |
411 |
Q |
| |
|
|||||||||||||||||||||| || ||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
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| T |
37752337 |
caattgccatgctacaagcacctgctactaaaccagcgaaaccagctaggagcattactttgatgtcttcttttatagctccaacaccaatcatcaacga |
37752436 |
T |
|
| Q |
412 |
cgcaacggtgattagtcc |
429 |
Q |
| |
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||||||||||||||||| |
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| T |
37752437 |
tgcaacggtgattagtcc |
37752454 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 254 - 354
Target Start/End: Original strand, 44635546 - 44635646
Alignment:
| Q |
254 |
tctctttttatctgagctatctcaatgtcatattgagtataaacagaaacaaactcaccaattgccatgctacaagcaccagcgactaaaccagcaaaac |
353 |
Q |
| |
|
|||||||||| ||||| || ||||||||| ||| | ||||||||| ||||||||||| |||||||||||||| |||||||| || | |||||||||| |
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| T |
44635546 |
tctctttttaattgagcaatttcaatgtcaagttgtgaataaacagatacaaactcacctattgccatgctacatgcaccagctacaagtccagcaaaac |
44635645 |
T |
|
| Q |
354 |
c |
354 |
Q |
| |
|
| |
|
|
| T |
44635646 |
c |
44635646 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0119 (Bit Score: 36; Significance: 0.00000000004; HSPs: 2)
Name: scaffold0119
Description:
Target: scaffold0119; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 275 - 350
Target Start/End: Original strand, 13475 - 13550
Alignment:
| Q |
275 |
tcaatgtcatattgagtataaacagaaacaaactcaccaattgccatgctacaagcaccagcgactaaaccagcaa |
350 |
Q |
| |
|
||||| |||||||| | ||| ||||| ||||| |||||||||||||||||||| |||||||| || | |||||||| |
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|
| T |
13475 |
tcaatatcatattgtgaatagacagacacaaattcaccaattgccatgctacatgcaccagctacaagaccagcaa |
13550 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0119; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 275 - 350
Target Start/End: Original strand, 19155 - 19230
Alignment:
| Q |
275 |
tcaatgtcatattgagtataaacagaaacaaactcaccaattgccatgctacaagcaccagcgactaaaccagcaa |
350 |
Q |
| |
|
||||| |||||||| | ||| ||||| ||||| |||||||||||||||||||| |||||||| || | |||||||| |
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|
| T |
19155 |
tcaatatcatattgtgaatagacagacacaaattcaccaattgccatgctacatgcaccagctacaagaccagcaa |
19230 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 36; Significance: 0.00000000004; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 275 - 350
Target Start/End: Complemental strand, 1293119 - 1293044
Alignment:
| Q |
275 |
tcaatgtcatattgagtataaacagaaacaaactcaccaattgccatgctacaagcaccagcgactaaaccagcaa |
350 |
Q |
| |
|
||||| |||||||| | ||| ||||| ||||| |||||||||||||||||||| |||||||| || | |||||||| |
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|
| T |
1293119 |
tcaatatcatattgtgaatagacagacacaaattcaccaattgccatgctacatgcaccagctacaagaccagcaa |
1293044 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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