View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18107_high_2 (Length: 808)

Name: NF18107_high_2
Description: NF18107
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18107_high_2
NF18107_high_2
[»] chr2 (1 HSPs)
chr2 (18-794)||(45354890-45355666)


Alignment Details
Target: chr2 (Bit Score: 630; Significance: 0; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 630; E-Value: 0
Query Start/End: Original strand, 18 - 794
Target Start/End: Original strand, 45354890 - 45355666
Alignment:
Q  18 ctattcactgctgacacttttagaaactacaagcgtcccagataactttcaagtgcttatcaaattcagctaattgtaacttacattacttttttaatat 117  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  45354890 ctattcactgctgacacttttagaaactacaagcgtcccagataactttcaagtgcttatcaaattcagctaattgtaacttacattacttttttaatat 45354989  T
Q  118 taaccaaaattttctaatgaaaaaataagcagatttttaatggtgtgcaatgtgctgcttcagctgtcctctgcaagaannnnnnnnnnnnnnnnngaaa 217  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||                 ||||    
T  45354990 taaccaaaattttctaatgaaaaaataagcagatttttaatggtgtgcaatgtgctgcttcagctgtcctctgcaagaatttttatttttatttttgaaa 45355089  T
Q  218 aattataaagaaatgaaaagtgaaaccatactgaacttgctacattttacgaagctggccaaatcagttgatggaaatacnnnnnnnnnncaaagaagga 317  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||          ||||||||||    
T  45355090 aattataaagaaatgaaaagtgaaaccatactgaacttgctacattttacgaagctggccaaatcagttgatggaaatacaaaaaaaaa-caaagaagga 45355188  T
Q  318 cttatagttgtcaaattaccactaaataagatgttaataccaatatgcaaatttatttagacaaacacatgataactataatgagcatggaggataacga 417  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  45355189 cttatagttgtcaaattaccactaaataagatgttaataccaatatgcaaatttatttagacaaacacatgataactataatgagcatggaggataacga 45355288  T
Q  418 atcccctaaatgcaaaggaaagcactttccccaaagaaaaaggaaaaacaaattattacttatgggaaaggtgataatgtatgcatacctttcatccttc 517  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  45355289 atcccctaaatgcaaaggaaagcactttccccaaagaaaaaggaaaaacaaattattacttatgggaaaggtgataatgtatgcatacctttcatccttc 45355388  T
Q  518 tccttcatcatttgctcagtggcccttgcaatcagtgttgatatccatttattcactgcatcaattaaaattcagtaataaataaacaaaaattcaataa 617  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  45355389 tccttcatcatttgctcagtggcccttgcaatcagtgttgatatccatttattcactgcatcaattaaaattcagtaataaataaacaaaaattcaataa 45355488  T
Q  618 atgaagatttgactatatttttgtatatttaaaatgatannnnnnnnnnnnnnnnnnaatctatgtttagttttggacttttggatctcttattgttt-a 716  Q
    |||||||||||||||||||||||||||||||||||||||                  ||||||||||||||||||||||||||||||||||||||||| |    
T  45355489 atgaagatttgactatatttttgtatatttaaaatgatattttttttagttttttttaatctatgtttagttttggacttttggatctcttattgtttaa 45355588  T
Q  717 aattattcaactttgatacctgttattgatgagaatgggaactgcagtgtagaggatggttatcagcttagttctgtg 794  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  45355589 aattattcaactttgatacctgttattgatgagaatgggaactgcagtgtagaggatggttatcagcttagttctgtg 45355666  T

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