View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18107_high_22 (Length: 406)
Name: NF18107_high_22
Description: NF18107
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18107_high_22 |
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Alignment Details
Target: chr8 (Bit Score: 233; Significance: 1e-128; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 233; E-Value: 1e-128
Query Start/End: Original strand, 130 - 398
Target Start/End: Complemental strand, 38277592 - 38277321
Alignment:
| Q |
130 |
ataaccgtgcttgtaagcaagattggtctagtga---gtataaattaattataagcatatacgttttattctgttctttaaagtttnnnnnnntatatgt |
226 |
Q |
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| T |
38277592 |
ataaccgtgcttgtaagcaagattggtctagtgatcagtatacattaattataagcatatacgttttattctgttctttaaagtttaaaaaaatatatgt |
38277493 |
T |
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| Q |
227 |
ttgtgtttgttgatatgtggctaaaaacgtgaagtgagattacatcatgattgatgatcacataatatattggttctattatatataaatagtattcact |
326 |
Q |
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| T |
38277492 |
ttgtgtttgttgatatgtggctaaaaacgtgaagtgagattacatcatgattgatgatcacataatatattggttctattatatataaatagtattcact |
38277393 |
T |
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| Q |
327 |
tgtgcttatgttggtagctggattattattgacaactgaatcaaacaattccaagatattatagcctatgat |
398 |
Q |
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| T |
38277392 |
tgtgcttatgttggtagctggattattattgacaactgaatcaaacaattccaagatattatagcctatgat |
38277321 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 79; E-Value: 8e-37
Query Start/End: Original strand, 18 - 96
Target Start/End: Complemental strand, 38277673 - 38277595
Alignment:
| Q |
18 |
ggaacactcttgcatcagtgcatgtataagttcaagtgataaatccaaaatcttaacctattttagatgtcaaattaag |
96 |
Q |
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| T |
38277673 |
ggaacactcttgcatcagtgcatgtataagttcaagtgataaatccaaaatcttaacctattttagatgtcaaattaag |
38277595 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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