View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18107_high_24 (Length: 402)
Name: NF18107_high_24
Description: NF18107
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18107_high_24 |
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Alignment Details
Target: chr2 (Bit Score: 339; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 339; E-Value: 0
Query Start/End: Original strand, 17 - 387
Target Start/End: Original strand, 19172004 - 19172374
Alignment:
| Q |
17 |
aatatcaacaagaacacttctccttaacctatttgcataaagaacaacactaacaaactcttctatgtaaaccctaacatcatttcccaaaacagctttc |
116 |
Q |
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| T |
19172004 |
aatatcaacaagaacacttctccttaacctatttgcataaagaacaacactaacaaactcttctatgtaaaccctaacatcatttcccaaaacaactttc |
19172103 |
T |
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| Q |
117 |
cctttattatcaccgcgatctttacacgaaaaccagtcaccaacaacgtgttcaacgaaacagccttccgcgcgtgtaagcctatcgttaagtgttggaa |
216 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||| || || |||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
19172104 |
cctttattatcaccgcgatctttacacgaaaaccagtcaccaacaacgtttttaatgaaacagccttccgcgcgtgtaagcctatcgttaagcgttggaa |
19172203 |
T |
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| Q |
217 |
cgatggacttcaaaccgcactctatttgttccatacgtgttcttagggtttctgatggattcctccatgccatggctatttgccatggacgatcagaaga |
316 |
Q |
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|||||||||||||||||||||||||||| |||||||||||| ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
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| T |
19172204 |
cgatggacttcaaaccgcactctatttgctccatacgtgttattagggtttctgatggattcctccacgccatggctatttgccatggacgatcagaaga |
19172303 |
T |
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| Q |
317 |
cattgaaaccgatgaattatcattggtttcggtttcattgtcttcgtcgtcaagaaaagaacgagcaagat |
387 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
19172304 |
cattgaaaccgatgaattatcattggtttcggtttcattgtcttcgtcgtcaagaaaagaacgagcaagat |
19172374 |
T |
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