View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18107_high_27 (Length: 381)
Name: NF18107_high_27
Description: NF18107
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18107_high_27 |
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| [»] scaffold0580 (2 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 184; Significance: 2e-99; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 184; E-Value: 2e-99
Query Start/End: Original strand, 143 - 373
Target Start/End: Complemental strand, 15415220 - 15414990
Alignment:
| Q |
143 |
caatgttggtcagatatctctctctttaccatatgtttacctcactctctt-atcactcactggcttgagcattggaacacgtgtacaccaccccctccg |
241 |
Q |
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| T |
15415220 |
caatgttggt-aggtatctctctctttaccatatgtttatctcactctcttgatcactcactggcttgagcattggaacacgtgtacaccaccccctccg |
15415122 |
T |
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| Q |
242 |
atggagaactcacaacagagtgcaatagactcacaactgattcctccctctttgcagtaacaatcaatcctcgaaccatcttccttatatccgaaaggat |
341 |
Q |
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| T |
15415121 |
atggagaactcacgacagagtacgatagactcacaacggattcctccctcttcgcagtaacaatcaatcctcgaaccatcttccttatatccgaaaggat |
15415022 |
T |
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| Q |
342 |
tattgcctaagccaaattcacctgcctatgct |
373 |
Q |
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| T |
15415021 |
tattgcctaagccaaattcacctgcccatgct |
15414990 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 81; E-Value: 5e-38
Query Start/End: Original strand, 18 - 145
Target Start/End: Complemental strand, 15415379 - 15415258
Alignment:
| Q |
18 |
cttaaatcctactggattgtggtctggacgctctatctgaactgttcagtctggatccaatattgtgattatcaccagatcattacaagtgtcccttgag |
117 |
Q |
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| T |
15415379 |
cttaaattctactggattgtgatctggacgctatatc------gtgcagtctggatccaatattgtgattatcactagatcattacaagtgtcccttgag |
15415286 |
T |
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| Q |
118 |
gacacatgtgcgaaggcctaacaaccaa |
145 |
Q |
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| T |
15415285 |
gacacctgtgcgaaggcctaacaaccaa |
15415258 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 44; Significance: 6e-16; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 38 - 121
Target Start/End: Original strand, 40410152 - 40410235
Alignment:
| Q |
38 |
ggtctggacgctctatctgaactgttcagtctggatccaatattgtgattatcaccagatcattacaagtgtcccttgaggaca |
121 |
Q |
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| T |
40410152 |
ggtcaggacgctatatctggaccgttcaatctagatccaatgatgtgactatcaccagattattacaagtgtcccttgaggaca |
40410235 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0580 (Bit Score: 29; Significance: 0.0000005; HSPs: 2)
Name: scaffold0580
Description:
Target: scaffold0580; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 61 - 121
Target Start/End: Original strand, 1214 - 1274
Alignment:
| Q |
61 |
gttcagtctggatccaatattgtgattatcaccagatcattacaagtgtcccttgaggaca |
121 |
Q |
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| T |
1214 |
gttcaatctagatccaatgatgtgactatcaccagattattacaagtgtcccataaggaca |
1274 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0580; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 61 - 121
Target Start/End: Original strand, 8953 - 9013
Alignment:
| Q |
61 |
gttcagtctggatccaatattgtgattatcaccagatcattacaagtgtcccttgaggaca |
121 |
Q |
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| T |
8953 |
gttcaatctagatccaatgatgtgactatcaccagattattacaagtgtcccataaggaca |
9013 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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