View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18107_high_29 (Length: 369)
Name: NF18107_high_29
Description: NF18107
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18107_high_29 |
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Alignment Details
Target: chr4 (Bit Score: 291; Significance: 1e-163; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 291; E-Value: 1e-163
Query Start/End: Original strand, 19 - 357
Target Start/End: Original strand, 2839493 - 2839840
Alignment:
| Q |
19 |
gttctgaataccagtaaagtaacattagatagta-------gcatatatatgaagattgcaaatgcacatgatgaacactatgaactaggaagactttta |
111 |
Q |
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| T |
2839493 |
gttctgaataccagtaaagtaacatgagatagtatactgtagcatatatatgaagattgcaaatgcacatgatgaacactatgaactaggaagactttta |
2839592 |
T |
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| Q |
112 |
taatcaaaatcatcga--gaatgataactatgttgaagatttgtcacttacagttcacactaacttctttctccgaagcaggatttatgctctgactgga |
209 |
Q |
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| T |
2839593 |
taatcaaaatcatcgaaagaatgataacgatgttgaagatttgtcacttacagttcacactaacttctttctccgaagcaggaattatgctctgactgga |
2839692 |
T |
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| Q |
210 |
tctatcttcaatactattgttgcttccatcacaaggcaagcaagaacagaacgcaaccacatcagatcgaaaagtatcacaaggaatgaccaaatcgttc |
309 |
Q |
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| T |
2839693 |
tctatcttcaatactattgttgcttccatcataaggcaagcaagaacagaacgcaaccacatcagatcgaaaagtatcacaaggaatgaccgaatcgttc |
2839792 |
T |
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| Q |
310 |
tttccataatcataactacctctcttcctccgccgaattccagaccta |
357 |
Q |
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| T |
2839793 |
tttccataatcataactacctctcttcctccgccgaattccagaccta |
2839840 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 147 - 357
Target Start/End: Original strand, 2843855 - 2844062
Alignment:
| Q |
147 |
gatttgtcacttacagttcacactaacttctttctccgaagcaggatttatgctctgactggatctatcttcaatactattgttgcttccatcacaaggc |
246 |
Q |
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| T |
2843855 |
gatttttcacttacagtgcacattaacttctttccctgaatcaagatatatgctctgacttgatctatctttaatcacactgctgcttccatcacaaggc |
2843954 |
T |
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| Q |
247 |
aagcaagaacagaacgcaaccacatcagatcgaaaagtatcacaaggaatgaccaaatcgttctttccataatcataactacctctcttcctccgccgaa |
346 |
Q |
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| T |
2843955 |
aagcaagaactgaatgca---acatcagactggaaactatcacaacgaataaccgaatccatttttccataatcataactccccctcttcctccgccgag |
2844051 |
T |
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| Q |
347 |
ttccagaccta |
357 |
Q |
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|||| |||||| |
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| T |
2844052 |
ttcctgaccta |
2844062 |
T |
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