View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18107_high_3 (Length: 773)
Name: NF18107_high_3
Description: NF18107
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18107_high_3 |
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Alignment Details
Target: chr1 (Bit Score: 334; Significance: 0; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 334; E-Value: 0
Query Start/End: Original strand, 326 - 763
Target Start/End: Original strand, 40692570 - 40693012
Alignment:
| Q |
326 |
ttcttctactcttttttctaaaccatatannnnnnnaaagcggcgtgtccggattcgaaccccagcctctgcatataacaatatgtatgtctctgcaact |
425 |
Q |
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| T |
40692570 |
ttcttctactctttttcctaaaccgtatattttttttaagcggcgtgtccgggttcgaacctcagcctctgcatataacaatatgtatgtctctgcaact |
40692669 |
T |
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| Q |
426 |
gagttatgctcacggagacttcatcaatcatatttaacctcttgttttatttaaaaataatacatacatgcatatttcttggttcacagtatcatatata |
525 |
Q |
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|||||||| ||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40692670 |
gagttatgttcacggagatttcatcaaccatatttaacctcttgttttatttaaaaataatacatacatgcatatttcttggttcacagtatcatatata |
40692769 |
T |
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| Q |
526 |
tcattttcaaattttgatttcattnnnnnnnn-----ctctttgtagtgtcattatagagagcttgcttgtgtagctactgccatacttgcagttgaaaa |
620 |
Q |
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| T |
40692770 |
tctttttcaaattttgatctcattaaaaaaaaaaaacctctttgtagtgtcattatagagagcttgcttgtgtagctactgccatacttgcagttgaaaa |
40692869 |
T |
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| Q |
621 |
atgctttctgttgaagcactctttgcttttagattatacatacctatagtatttattttatagtacacagaagtttaggttatacgcagagtatacgcaa |
720 |
Q |
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| T |
40692870 |
atgctttctgttgaagcactctttgcttttagattatacatacctatagtttttattttatagtacacagaagtttaggttatacgcagagtatacgcaa |
40692969 |
T |
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| Q |
721 |
atacaccatacttgaatataccttgcctctaccccaccctttg |
763 |
Q |
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| T |
40692970 |
atacaccatacttgaatataccttgcctctaccccaccctttg |
40693012 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 258; E-Value: 1e-143
Query Start/End: Original strand, 22 - 303
Target Start/End: Original strand, 40692268 - 40692544
Alignment:
| Q |
22 |
tgaacttggttcagtagttattttcattagaggtaaatggatcagttcctagcattgagaaaatagatcactgacttttttcttttaaaattgaagtata |
121 |
Q |
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| T |
40692268 |
tgaacttggttcagtagttattttcattagaggtaaatggatcagttcctagcattcagaaaatagatcactgacttttttcttttaaaattgaagtata |
40692367 |
T |
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| Q |
122 |
taaatttctgtgacagatttaattggtgtcatgtggtccacttgattcatgaagaatactacactctacacaatacacttgacatgaaacaatgtcttta |
221 |
Q |
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| T |
40692368 |
taaatttctgtgacagatttaattggtgtcatgtggtccacttgattcatgaagaatactacactctacacaatacacttgacatgaaacaatgtcttta |
40692467 |
T |
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| Q |
222 |
aacgaatataatcaaagaatactgttattctagtgacatcatactatactagtagtatagataatgctagagacttactcac |
303 |
Q |
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| T |
40692468 |
aacgaatataatcaaagaatactgttattctagtgacatcatactatactag-----tagataatgctagagacttactcac |
40692544 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 30; Significance: 0.0000003; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 376 - 445
Target Start/End: Complemental strand, 10442946 - 10442878
Alignment:
| Q |
376 |
ggattcgaaccccagcctctgcatataacaatatgtatgtctctgcaactgagttatgctcacggagact |
445 |
Q |
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| T |
10442946 |
ggattcgaaccccaacccctacatataacaatgtatatctctat-caactgagttatgctcacggtgact |
10442878 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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