View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18107_high_4 (Length: 727)

Name: NF18107_high_4
Description: NF18107
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18107_high_4
NF18107_high_4
[»] chr5 (13 HSPs)
chr5 (225-698)||(39858107-39858580)
chr5 (1-187)||(39857919-39858110)
chr5 (462-659)||(39848649-39848845)
chr5 (232-445)||(39848360-39848573)
chr5 (220-434)||(39898972-39899185)
chr5 (215-446)||(39911999-39912231)
chr5 (215-309)||(38971851-38971945)
chr5 (269-446)||(39865475-39865651)
chr5 (213-446)||(37466852-37467079)
chr5 (546-659)||(39865811-39865921)
chr5 (136-200)||(39848261-39848325)
chr5 (403-446)||(38967973-38968016)
chr5 (490-659)||(37467186-37467356)
[»] chr1 (1 HSPs)
chr1 (92-132)||(9939563-9939603)
[»] scaffold0057 (1 HSPs)
scaffold0057 (95-132)||(43734-43771)


Alignment Details
Target: chr5 (Bit Score: 470; Significance: 0; HSPs: 13)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 470; E-Value: 0
Query Start/End: Original strand, 225 - 698
Target Start/End: Original strand, 39858107 - 39858580
Alignment:
Q  225 taaaacccaacaaccagagatgaaaaagtcataaaatatgaagcttgaaggggatatatgagcaaaacaatattgaaaaacttcaagcaatctcatgaac 324  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  39858107 taaaacccaacaaccagagatgaaaaagtcataaaatatgaagcttgaaggggatatatgagcaaaacaatattgaaaaacttcaagcaatctcatgaac 39858206  T
Q  325 ttacagattttgcttcctcgatgtatgtcaaaggccgatatggtcgatatgtaccgtttacacgctttttccaaatccaaaagcgctggaattgagctag 424  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  39858207 ttacagattttgcttcctcgatgtatgtcaaaggccgatatggtcgatatgtaccgtttacacgctttttccaaatccaaaagcgctggaattgagctag 39858306  T
Q  425 tatgccaaactctctagcaaccatgttctatatatcacatcacaaaattcataagttataatataaattacaaaaccaaaagcataaaaaccacaagatt 524  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||    
T  39858307 tatgccaaactctctagcaaccatgttctatatatcacatcacaaaattcttaagttataatataaattacaaaaccaaaagcataaaaaccacaagatt 39858406  T
Q  525 catatgacgtatgtttttcttcttcctactaaagcattgtgatttttatatttcagaactgtatttaaaataattgtttcctatatgaggattcatctaa 624  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  39858407 catatgacgtatgtttttcttcttcctactaaagcattgtgatttttatatttcagaactgtatttaaaataattgtttcctatatgaggattcatctaa 39858506  T
Q  625 aataatgattttctcttaagcagttcacaaactaattaaccagcatgtcttaaaggccattgaattcccttgca 698  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  39858507 aataatgattttctcttaagcagttcacaaactaattaaccagcatgtcttaaaggccattgaattcccttgca 39858580  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 138; E-Value: 9e-72
Query Start/End: Original strand, 1 - 187
Target Start/End: Original strand, 39857919 - 39858110
Alignment:
Q  1 cacaaaaaattaagcaccctcacaagcattaagggnnnnnnn-ctatgggatccaaaaacaatcaacatagagaaagggcagcccggtttgataaagctc 99  Q
    |||||||||||||||||||||||||||||||||||        ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||    
T  39857919 cacaaaaaattaagcaccctcacaagcattaagggaaaaaaaactatgggatccaaaaacaatcaatatagagaaagggcagcccggtttgataaagctc 39858018  T
Q  100 ccgcatatgcag----ggtccgagaggggggtcccacaattaagtatcaacttgatatagatgtcatgagcagattcaacattaaacataaa 187  Q
    ||||||||||||    ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||    
T  39858019 ccgcatatgcaggcagggtccgagaggggggtcccacaattaagtatcagcttgatatagatgtcatgagcagattcaacattaaacataaa 39858110  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 118; E-Value: 8e-60
Query Start/End: Original strand, 462 - 659
Target Start/End: Original strand, 39848649 - 39848845
Alignment:
Q  462 catcacaaaattcataagttataatataaattacaaaaccaaaagcataaaaaccacaagattcatatgacgtatgtttttcttcttcctactaaagcat 561  Q
    ||||||| ||||||||||||||||||||||||||||||| ||| |||||||||||||||||||| | ||||||||||| |||||||||| ||||||||||    
T  39848649 catcacataattcataagttataatataaattacaaaac-aaatgcataaaaaccacaagattcgtgtgacgtatgttgttcttcttccaactaaagcat 39848747  T
Q  562 tgtgatttttatatttcagaactgtatttaaaataattgtttcctatatgaggattcatctaaaataatga--ttttctcttaagcagttcacaaactaa 659  Q
    |||||||||||||||| || | ||||||||||||||||||||||  ||||| ||| |||||||||||||||  ||||||||||| | |||||||||||||    
T  39848748 tgtgatttttatattttagtattgtatttaaaataattgtttcc--tatgacgatgcatctaaaataatgattttttctcttaatcggttcacaaactaa 39848845  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 110; E-Value: 5e-55
Query Start/End: Original strand, 232 - 445
Target Start/End: Original strand, 39848360 - 39848573
Alignment:
Q  232 caacaaccagagatgaaaaagtcataaaatatgaagcttgaaggggatatatgagcaaaacaatattgaaaaacttcaagcaatctcatgaacttacaga 331  Q
    |||||| ||||||||||||||||||||| ||||| |||| ||| || |||||||||||||||||||||||||  |||||||||| |  |||| |||||||    
T  39848360 caacaatcagagatgaaaaagtcataaattatgatgcttaaagcggctatatgagcaaaacaatattgaaaagtttcaagcaattttgtgaatttacaga 39848459  T
Q  332 ttttgcttcctcgatgtatgtcaaaggccgatatggtcgatatgtaccgtttacacgctttttccaaatccaaaagcgctggaattgagctagtatgcca 431  Q
    || |||||| ||||||| ||||||| ||||| |||||||| |||||  |||| ||||||||| ||| | |||||||||||||||||||||| ||||||||    
T  39848460 ttgtgcttcatcgatgtgtgtcaaaagccgagatggtcgacatgtatggttttcacgcttttcccataaccaaaagcgctggaattgagctggtatgcca 39848559  T
Q  432 aactctctagcaac 445  Q
    |||||| |||||||    
T  39848560 aactctttagcaac 39848573  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 73; E-Value: 6e-33
Query Start/End: Original strand, 220 - 434
Target Start/End: Original strand, 39898972 - 39899185
Alignment:
Q  220 ttgcctaaaacccaacaaccagagatgaaaaagtcataaaatatgaagcttgaaggggatatatgagcaaaacaatattgaaaaacttca-agcaatctc 318  Q
    |||||||||| |||| ||||| | | ||||||||||||||||| |||||||||||||  ||| ||||||||  ||||||||||  ||||| ||  ||||     
T  39898972 ttgcctaaaagccaaaaaccaaaaacgaaaaagtcataaaataagaagcttgaagggagtatgtgagcaaataaatattgaaaggcttcatag--atctg 39899069  T
Q  319 atgaacttacagattttgcttcctcgatgtatgtcaaaggccgatatggtcgatatgtaccgtttacacgctttttccaaatccaaaagcgctggaattg 418  Q
    ||||| |||||| |  ||||||||| |||| ||||||||||||| | |||||| |||||  ||||  |||||||| ||| | ||||||||||||||||||    
T  39899070 atgaatttacaggtcctgcttcctcaatgtttgtcaaaggccgagaaggtcgacatgtatggttttgacgcttttcccataaccaaaagcgctggaattg 39899169  T
Q  419 agctagtatgccaaac 434  Q
    |||| |||||||||||    
T  39899170 agctggtatgccaaac 39899185  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 215 - 446
Target Start/End: Original strand, 39911999 - 39912231
Alignment:
Q  215 aacatttgcctaaaacccaacaaccagagatgaaaaagtcataaaatatgaagcttgaaggggatatatgagcaaaacaatattgaaaaa--cttca-ag 311  Q
    ||||||| ||||||| | ||||| |||| ||||||| |||| | |||| |||||||||||||| ||||||||||||| |||||| |||||  ||||| ||    
T  39911999 aacattttcctaaaagcaaacaatcagaaatgaaaaggtcacagaataagaagcttgaagggggtatatgagcaaaataatattcaaaaaagcttcatag 39912098  T
Q  312 caatctcatgaacttacagattttgcttcctcgatgtatgtcaaaggccgatatggtcgatatgtaccgtttacacgctttttccaaatccaaaagcgct 411  Q
      ||||||| || |||||| |  ||||||||| ||||||||||| |||||| |||| |||||||||  ||||| |||||||  ||| | |||||||||||    
T  39912099 --atctcataaatttacaggtgctgcttcctcaatgtatgtcaatggccgaaatggacgatatgtatggtttagacgctttgcccatagccaaaagcgct 39912196  T
Q  412 ggaattgagctagtatgccaaactctctagcaacc 446  Q
    ||||| ||||  ||||||| |||||| | ||||||    
T  39912197 ggaatcgagccggtatgccgaactctttggcaacc 39912231  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 215 - 309
Target Start/End: Complemental strand, 38971945 - 38971851
Alignment:
Q  215 aacatttgcctaaaacccaacaaccagagatgaaaaagtcataaaatatgaagcttgaaggggatatatgagcaaaacaatattgaaaaacttca 309  Q
    |||| ||||||||||||||||||||||| |  |||||||||||||||| |||| ||||||||| |||||||||||||  |||||||||| |||||    
T  38971945 aacacttgcctaaaacccaacaaccagaaacaaaaaagtcataaaataagaagtttgaagggggtatatgagcaaaatcatattgaaaagcttca 38971851  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 269 - 446
Target Start/End: Original strand, 39865475 - 39865651
Alignment:
Q  269 ttgaaggggatatatgagcaaaacaatattgaaaaacttcaagcaatctcatgaacttacagattttgcttcctcgatgtatgtcaaaggccgatatggt 368  Q
    ||||||||| ||||| ||||||| |||||||| || |||||||  |||| ||||| |||||| |  ||||||||| |||  |||||| || ||| ||||     
T  39865475 ttgaagggg-tatatcagcaaaataatattgataagcttcaagagatcttatgaatttacaggtcctgcttcctcaatgcgtgtcaacggacgaaatgga 39865573  T
Q  369 cgatatgtaccgtttacacgctttttccaaatccaaaagcgctggaattgagctagtatgccaaactctctagcaacc 446  Q
    ||| ||||| ||||| ||||||||    | | |||||||||||||||||||||| |||||| ||||||| ||||||||    
T  39865574 cgacatgtatcgttttcacgctttgcaaatacccaaaagcgctggaattgagctggtatgcaaaactctttagcaacc 39865651  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 48; E-Value: 5e-18
Query Start/End: Original strand, 213 - 446
Target Start/End: Original strand, 37466852 - 37467079
Alignment:
Q  213 ccaacatttgcctaaaacccaacaaccagagatgaaaaagtcataaaatatgaagcttgaaggggatatatgagcaaaacaatattgaaaaacttcaagc 312  Q
    ||||||||||||||||| ||||||    || ||||||| |||  |||||| |||||||||| |   |||||||| ||||  |||| || |||||| ||||    
T  37466852 ccaacatttgcctaaaagccaaca----gacatgaaaaggtcgcaaaataagaagcttgaaag---tatatgagaaaaatgatatcgataaactttaagc 37466944  T
Q  313 aatctcatg-aacttacagattttgcttcctcgatgtatgtcaaaggccgatatggtcgatatgtaccgtttacacgctttttccaaatccaaaagcgct 411  Q
    ||  ||||| |||||||||||| ||||||||| || | |||||| || ||||  || |||||||||  ||||  |||||||  ||| | |||||||||||    
T  37466945 aagatcatggaacttacagattgtgcttcctcaatttgtgtcaatggacgattaggacgatatgtatggttttgacgctttgcccatagccaaaagcgct 37467044  T
Q  412 ggaattgagctagtatgccaaactctctagcaacc 446  Q
    |||||||| |  ||||||| |||||| ||||||||    
T  37467045 ggaattgaacaggtatgccgaactctttagcaacc 37467079  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 546 - 659
Target Start/End: Original strand, 39865811 - 39865921
Alignment:
Q  546 cttcctactaaagcattgtgatttttatatttcagaactgtatttaaaataattgtttcctatatgaggattcatctaaaataatgattttctcttaagc 645  Q
    ||||| ||||||||||  ||||||| |||||| || | ||  |||||||||||||||| |||||  ||||| |||||||||||||||||||||||  |||    
T  39865811 cttccaactaaagcatcatgatttt-atatttaagtattgattttaaaataattgttttctata--aggatgcatctaaaataatgattttctctatagc 39865907  T
Q  646 agttcacaaactaa 659  Q
    ||||||||||||||    
T  39865908 agttcacaaactaa 39865921  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 136 - 200
Target Start/End: Original strand, 39848261 - 39848325
Alignment:
Q  136 taagtatcaacttgatatagatgtcatgagcagattcaacattaaacataaatgaggggtaaaag 200  Q
    ||||||||| ||||||||| ||| ||||||||||||||||||  |||||||||||||||||||||    
T  39848261 taagtatcagcttgatataaatgacatgagcagattcaacatgtaacataaatgaggggtaaaag 39848325  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 403 - 446
Target Start/End: Complemental strand, 38968016 - 38967973
Alignment:
Q  403 aaaagcgctggaattgagctagtatgccaaactctctagcaacc 446  Q
    |||||||||||||||||||| |||||||||||||| ||||||||    
T  38968016 aaaagcgctggaattgagctggtatgccaaactctttagcaacc 38967973  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 490 - 659
Target Start/End: Original strand, 37467186 - 37467356
Alignment:
Q  490 aattacaaaaccaaaagcataaaaacca-caagattcatatgacgtatgtttttcttcttcctactaaagcattgtgatttttatatttcagaactgtat 588  Q
    |||||||||| |||||||||||| ||||  |||||||||| ||| | | ||||||||||||| | |||| | |  ||| |||||||||| || ||||| |    
T  37467186 aattacaaaatcaaaagcataaagaccataaagattcataagacctgt-tttttcttcttccaaataaatcttcatgaattttatattttagtactgttt 37467284  T
Q  589 tt-aaaataattgtttcctatatgaggattcatctaaaataatgattttctcttaagcagttcacaaactaa 659  Q
    || |||||||| |||| ||||  |||||| || | ||||||||   || ||| | |||||||||||||||||    
T  37467285 ttaaaaataatagttttctatgagaggatgcaacaaaaataatagcttgctccttagcagttcacaaactaa 37467356  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 33; Significance: 0.000000004; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 92 - 132
Target Start/End: Complemental strand, 9939603 - 9939563
Alignment:
Q  92 taaagctcccgcatatgcagggtccgagaggggggtcccac 132  Q
    ||||||||||||||| ||||||||||||| |||||||||||    
T  9939603 taaagctcccgcatacgcagggtccgagaagggggtcccac 9939563  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0057 (Bit Score: 30; Significance: 0.0000003; HSPs: 1)
Name: scaffold0057
Description:

Target: scaffold0057; HSP #1
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 95 - 132
Target Start/End: Complemental strand, 43771 - 43734
Alignment:
Q  95 agctcccgcatatgcagggtccgagaggggggtcccac 132  Q
    ||||||||||||||||||||||||||  ||||||||||    
T  43771 agctcccgcatatgcagggtccgagaaaggggtcccac 43734  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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