View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF18107_high_42 (Length: 319)
Name: NF18107_high_42
Description: NF18107
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18107_high_42 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 143; Significance: 4e-75; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 143; E-Value: 4e-75
Query Start/End: Original strand, 7 - 153
Target Start/End: Original strand, 37809291 - 37809437
Alignment:
| Q |
7 |
ggagcagagattatcgagggtgcgtttgaaatcggaaacagttttgagggaagaacgaacatcgtaagagggaaggaaataggagctttgagcgacgagt |
106 |
Q |
| |
|
||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37809291 |
ggagctgagattatcgagggtgcgtttgaaatcggaaacagttttgagggaagaacgaacatcgtaagagggaaggaaataggagctttgagcgacgagt |
37809390 |
T |
|
| Q |
107 |
ttttctaaatcggagattgattgggagattttgtcgaagtgtgattt |
153 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37809391 |
ttttctaaatcggagattgattgggagattttgtcgaagtgtgattt |
37809437 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 219 - 300
Target Start/End: Original strand, 37809503 - 37809584
Alignment:
| Q |
219 |
taagttgggagaagcgggagaggaaggaggaagttgattcggtgggtggttcggtggaggtggtagttgatttggttgggtg |
300 |
Q |
| |
|
||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37809503 |
taagttgggagaagcgggagaggaatgaggaagttgattcggtgggtggttcggtggaggtggtagttgatttggttgggtg |
37809584 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 35; Significance: 0.0000000001; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 225 - 263
Target Start/End: Complemental strand, 49046998 - 49046960
Alignment:
| Q |
225 |
gggagaagcgggagaggaaggaggaagttgattcggtgg |
263 |
Q |
| |
|
||||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
49046998 |
gggagaagcgggagaggaaggaggaagttgatttggtgg |
49046960 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 14 - 54
Target Start/End: Complemental strand, 49047066 - 49047026
Alignment:
| Q |
14 |
agattatcgagggtgcgtttgaaatcggaaacagttttgag |
54 |
Q |
| |
|
|||||||||||||||||||||||||| ||||| ||||||| |
|
|
| T |
49047066 |
agattatcgagggtgcgtttgaaatctgaaacgattttgag |
49047026 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University