View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF18107_high_44 (Length: 304)
Name: NF18107_high_44
Description: NF18107
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18107_high_44 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 286; Significance: 1e-160; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 286; E-Value: 1e-160
Query Start/End: Original strand, 1 - 294
Target Start/End: Complemental strand, 52860619 - 52860326
Alignment:
| Q |
1 |
tgagaaagagaagaaggtattgatgagttaaggttgttggaatggagactaagtttacgaagctgtgagagattagagagtgatgaagatattgaaccag |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
52860619 |
tgagaaagagaagaaggtattgatgagttaaggttgttggaatggagactaagtttacgaagctgtgagagattagagagtgatgaagatattgaaccag |
52860520 |
T |
|
| Q |
101 |
tgagttgaagacgaggtaaacgtatagtgtgaactctgttattgttgttgtaacagagaatgccatgccaatcacatggtgctgaaggtgttgatggatc |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
52860519 |
tgagttgaagacgaggtaaacgtatagtgtgaactctgttattgttgttgtaacagagaatgccatgccaatcacatggtgctgaaggtgttgatggatc |
52860420 |
T |
|
| Q |
201 |
ccaagttgttaaggcattgagtgggtcaagaaggtttagtttgaagattgttaaggcttggatttcggaatgagatgagttgatctgtgatgct |
294 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||| |
|
|
| T |
52860419 |
ccaagttgttaaggcattgagtgggtcaagaaggtttagtttgaagattgttaaggcttggatttcggaatgagatgagttgatttgtgttgct |
52860326 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University