View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18107_high_47 (Length: 280)
Name: NF18107_high_47
Description: NF18107
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18107_high_47 |
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| [»] chr5 (6 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 260; Significance: 1e-145; HSPs: 6)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 260; E-Value: 1e-145
Query Start/End: Original strand, 1 - 280
Target Start/End: Complemental strand, 36756513 - 36756234
Alignment:
| Q |
1 |
aaaacttgttatagaggaaagaaaaacagaaagcaaaatgttagtttcaaggagaatccaaaacatcaaggtttaagtctggatgccaaacatataactt |
100 |
Q |
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|||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
36756513 |
aaaacttgttatagaggaaagaaaaacataaagcaaaatgttagtttcaaggagaatccaaaacatcaaggtttaagtctggatgccaaacatacaactt |
36756414 |
T |
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| Q |
101 |
gcattaccgcgttaccaaatccagctttgtactgcaatgaaatttgatctttcaattcttcaatttcagctttcaacctgtcaattgtaacccagtgatt |
200 |
Q |
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||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||| |
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| T |
36756413 |
gcattacggcgttaccaaatccagctttgtactgcaatgaaatttgatctttcaattcttcaattttagctttcaacctgtcaattgtaacccggtgatt |
36756314 |
T |
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| Q |
201 |
atcttatttgatcagtaatttgacattactcttgcaattttctacgcttaattcgttcaaagttttctttaatttatccc |
280 |
Q |
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| T |
36756313 |
atcttatttgatcagtaatttgacattactcttgcaattttctacgcttaattcgttcaaagttttctttaatttatccc |
36756234 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 110; E-Value: 2e-55
Query Start/End: Original strand, 64 - 257
Target Start/End: Complemental strand, 36749124 - 36748931
Alignment:
| Q |
64 |
catcaaggtttaagtctggatgccaaacatataacttgcattaccgcgttaccaaatccagctttgtactgcaatgaaatttgatctttcaattcttcaa |
163 |
Q |
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| T |
36749124 |
catcaaggtttaagtcttcatgcaaaaaatataacttgatttaccgcgttatcaaatccagctttgtactgcaatgagttttgatattttaattcttcaa |
36749025 |
T |
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| Q |
164 |
tttcagctttcaacctgtcaattgtaacccagtgattatcttatttgatcagtaatttgacattactcttgcaattttctacgcttaattcgtt |
257 |
Q |
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| T |
36749024 |
tttcagcatttaacctgtcaaccgtaacccagtgattatcttctttgatctgtaatttgacattactcttggaactttctacgtttaatacgtt |
36748931 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 189 - 280
Target Start/End: Complemental strand, 36755938 - 36755847
Alignment:
| Q |
189 |
aacccagtgattatcttatttgatcagtaatttgacattactcttgcaattttctacgcttaattcgttcaaagttttctttaatttatccc |
280 |
Q |
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| T |
36755938 |
aacccagtgattatcttcttcgatcagtaatttgacattactcttggaattttctacgcttaattcgtccaaagttttctttaatttatccc |
36755847 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 66 - 184
Target Start/End: Complemental strand, 21138790 - 21138672
Alignment:
| Q |
66 |
tcaaggtttaagtctggatgccaaacatataacttgcattaccgcgttaccaaatccagctttgtactgcaatgaaatttgatctttcaattcttcaatt |
165 |
Q |
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| T |
21138790 |
tcaaggtttaagtcctgatgcaaaaaatacaacttgcttcaccgccttatcataaccggctttgtactgcactgacattttatacttcagttcttcaatt |
21138691 |
T |
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| Q |
166 |
tcagctttcaacctgtcaa |
184 |
Q |
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| T |
21138690 |
tcagccttcaacttgtcaa |
21138672 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 121 - 175
Target Start/End: Complemental strand, 36772068 - 36772014
Alignment:
| Q |
121 |
ccagctttgtactgcaatgaaatttgatctttcaattcttcaatttcagctttca |
175 |
Q |
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| T |
36772068 |
ccagctttgtactgcaaagaaatttgatctttcagttctttaatttcagccttca |
36772014 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 38 - 78
Target Start/End: Complemental strand, 36772210 - 36772170
Alignment:
| Q |
38 |
atgttagtttcaaggagaatccaaaacatcaaggtttaagt |
78 |
Q |
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| T |
36772210 |
atgttagtttcaagaagaatccaaaacatcaaggttcaagt |
36772170 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 32; Significance: 0.000000006; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 66 - 177
Target Start/End: Original strand, 23432613 - 23432724
Alignment:
| Q |
66 |
tcaaggtttaagtctggatgccaaacatataacttgcattaccgcgttaccaaatccagctttgtactgcaatgaaatttgatctttcaattcttcaatt |
165 |
Q |
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|||||||||||| | ||||| ||| ||| ||||||| ||||||| || || | || ||||||||||| |||||||||| | |||||||| |||||| |
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| T |
23432613 |
tcaaggtttaagccctgatgcaaaatatacaacttgccttaccgccttttcatagccggctttgtactgtaatgaaattttacgcttcaattcctcaatt |
23432712 |
T |
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| Q |
166 |
tcagctttcaac |
177 |
Q |
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| T |
23432713 |
tcagccttcaac |
23432724 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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