View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18107_high_50 (Length: 263)
Name: NF18107_high_50
Description: NF18107
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18107_high_50 |
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Alignment Details
Target: chr7 (Bit Score: 218; Significance: 1e-120; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 218; E-Value: 1e-120
Query Start/End: Original strand, 18 - 247
Target Start/End: Original strand, 1482661 - 1482890
Alignment:
| Q |
18 |
catagggcaaaaggaaaaggagatttgggctgagcttaatcatcttccgatgatttatagggttccaaaagcaaagaacttggtgatttttccaatctgc |
117 |
Q |
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| T |
1482661 |
catagagcaaaaggaaaaggagatttgggctgagcttaatcatcttctgatgatttatagggatccaaaagcaaagaacttggtgatttttccaatctgc |
1482760 |
T |
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| Q |
118 |
ttaatcttctgcttgaagattaaagctgtatacattttagatttttccttgcatcaccattctttgatgattttgttgcaattttggtataatccattgt |
217 |
Q |
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| T |
1482761 |
ttaatcttctgcttgaagattaaagctgtatacattttagatttttccttgcatcaccattctttgatgattttgttgcaattttggtataatccattgt |
1482860 |
T |
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| Q |
218 |
atatattacaatgtatgactataattttga |
247 |
Q |
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| T |
1482861 |
atatattacaatgtatgactataattttga |
1482890 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 135; E-Value: 2e-70
Query Start/End: Original strand, 24 - 247
Target Start/End: Original strand, 36717394 - 36717623
Alignment:
| Q |
24 |
gcaaaaggaaaaggagatttgggctgagcttaatcatcttccgatgatttatagggttccaa------aagcaaagaacttggtgatttttccaatctgc |
117 |
Q |
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| T |
36717394 |
gcaaatgggaaaggagatttgggctgagcttaatcatcttctgatgatttatagggcttcaagaaggaaagcagagaacttggtgtttgatccagtttgt |
36717493 |
T |
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| Q |
118 |
ttaatcttctgcttgaagattaaagctgtatacattttagatttttccttgcatcaccattctttgatgattttgttgcaattttggtataatccattgt |
217 |
Q |
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| T |
36717494 |
gtaatcttctacttgaagattatagctgtatacattttagatttttccttgcatcatcattctttgatgattttgttgcaattttggtgtaatccattgt |
36717593 |
T |
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| Q |
218 |
atatattacaatgtatgactataattttga |
247 |
Q |
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| T |
36717594 |
atatattacaatgtatgactatagttttga |
36717623 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 129 - 191
Target Start/End: Original strand, 1483267 - 1483329
Alignment:
| Q |
129 |
cttgaagattaaagctgtatacattttagatttttccttgcatcaccattctttgatgatttt |
191 |
Q |
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||||||||||| || |||| |||||||| ||||||||||||| || |||||| |||||||||| |
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| T |
1483267 |
cttgaagattacagttgtaaacattttaaatttttccttgcaccatcattctatgatgatttt |
1483329 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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