View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18107_high_51 (Length: 256)
Name: NF18107_high_51
Description: NF18107
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18107_high_51 |
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Alignment Details
Target: chr1 (Bit Score: 173; Significance: 4e-93; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 173; E-Value: 4e-93
Query Start/End: Original strand, 15 - 191
Target Start/End: Complemental strand, 5113427 - 5113251
Alignment:
| Q |
15 |
aatatcattatgtgtaagcatgcatggacccacattttctggccaatccccaaatgtcatctctcatcactctaaccaacacgtacccaccgtacaattc |
114 |
Q |
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| T |
5113427 |
aatatcattatgtgtaagcatgcatggacccacattttctggccaatccccaaatgtcatctctcatcactctaaccaacacgtacccaccgtacaattc |
5113328 |
T |
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| Q |
115 |
caagtgtccttttccccttctttcttacttcatgttgcctctttcttattggtcacttttcataactctttcatata |
191 |
Q |
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| T |
5113327 |
caagtgtccctttccccttctttcttacttcatgttgcctctttcttattggtcacttttcataactctttcatata |
5113251 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 210 - 251
Target Start/End: Complemental strand, 5113249 - 5113205
Alignment:
| Q |
210 |
ttcatagacacataacataacataacat---atagccacacattt |
251 |
Q |
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| T |
5113249 |
ttcatagacacataacataacataacataacatagccacacattt |
5113205 |
T |
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