View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18107_high_52 (Length: 255)
Name: NF18107_high_52
Description: NF18107
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18107_high_52 |
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Alignment Details
Target: chr4 (Bit Score: 214; Significance: 1e-117; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 214; E-Value: 1e-117
Query Start/End: Original strand, 19 - 248
Target Start/End: Complemental strand, 34556472 - 34556243
Alignment:
| Q |
19 |
gttagtgcacataacatggaggtttacttgcatggaattgcaggaacacaaggaagtaaaggagggttcaatttagaggtgaatcgtgacattgcactat |
118 |
Q |
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| T |
34556472 |
gttagtgaacataacatggaggtttacttgcatggaattgcaggaacacaaggaagcaaaggagggttcaatttggaggtgaatcgtgacattgcactat |
34556373 |
T |
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| Q |
119 |
taaacaaaagtaatgatggtttaaaagatgagtatcatattcctgagaattggagggtagtggagaataagggtatggttcaacaatctgatggtacttg |
218 |
Q |
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| T |
34556372 |
taaacaaaagtaatgatggtttaaaagatgagtatcatattcctgagaattggagggtagtggagaataagggtatggttcaacaatctgatggtacttg |
34556273 |
T |
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| Q |
219 |
gaagctaatggataatcataatgatgatgt |
248 |
Q |
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| T |
34556272 |
gaagctaatggatgatcataatgatgatgt |
34556243 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 210; E-Value: 1e-115
Query Start/End: Original strand, 19 - 248
Target Start/End: Complemental strand, 34547979 - 34547750
Alignment:
| Q |
19 |
gttagtgcacataacatggaggtttacttgcatggaattgcaggaacacaaggaagtaaaggagggttcaatttagaggtgaatcgtgacattgcactat |
118 |
Q |
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| T |
34547979 |
gttagtgcacataacatggaggtttacttgcatggaattgcaggaacacaaggaagtaaaggagggttcaatttagaggtgaatcgtgacattgcactat |
34547880 |
T |
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| Q |
119 |
taaacaaaagtaatgatggtttaaaagatgagtatcatattcctgagaattggagggtagtggagaataagggtatggttcaacaatctgatggtacttg |
218 |
Q |
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| T |
34547879 |
taaacaaaagtaatgatggtttaaaagatgaatatcacattcctgagaattggagggtagttgagaataagggtatggttcaacaatctgatggtacttg |
34547780 |
T |
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| Q |
219 |
gaagctaatggataatcataatgatgatgt |
248 |
Q |
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| T |
34547779 |
gaagttaatggatgatcataatgatgatgt |
34547750 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 42; Significance: 0.000000000000006; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 35 - 224
Target Start/End: Complemental strand, 4674568 - 4674379
Alignment:
| Q |
35 |
tggaggtttacttgcatggaattgcaggaacacaaggaagtaaaggagggttcaatttagaggtgaatcgtgacattgcactattaaacaaaagtaatga |
134 |
Q |
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| T |
4674568 |
tggaggcttatttgcatggagtggcaggaacacaagggagtaaaagagtgttcaaacttgaggttaatcgtgatattgcacttgtgaataaaacattgga |
4674469 |
T |
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| Q |
135 |
tggtttaaaagatgagtatcatattcctgagaattggagggtagtggagaataagggtatggttcaacaatctgatggtacttggaagct |
224 |
Q |
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| T |
4674468 |
tggtttaaaagatgaataccttgtgccagtgtcatggagggttgtagagaataagggtatggttcaacaattagatggttcatggaagct |
4674379 |
T |
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