View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18107_high_64 (Length: 230)
Name: NF18107_high_64
Description: NF18107
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18107_high_64 |
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Alignment Details
Target: chr5 (Bit Score: 165; Significance: 2e-88; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 165; E-Value: 2e-88
Query Start/End: Original strand, 15 - 212
Target Start/End: Original strand, 8455957 - 8456160
Alignment:
| Q |
15 |
atgaagaagagactcaaacttccacaacttaggctgaggaacattagtgaaagttacaaatttggacttccatatattaatctttaagctagatttcaag |
114 |
Q |
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| T |
8455957 |
atgaagaagagactcaaacttccacaacttaggctgaggaatattagtgaaagttacaaatttggacttctatatattaatctttaagctagatttcaag |
8456056 |
T |
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| Q |
115 |
cat------aaagttgtaacacattaatccgaactggcttcacttgacaacatttagttatgttaagagaagacgatcatcaacaaatagtagatgaaaa |
208 |
Q |
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| T |
8456057 |
cataaaataaaagttgtaacacattaatccgaactggcttcacttgacaaaatttagttatattaagagaagacgatcatcaacaaatagtagatgaaaa |
8456156 |
T |
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| Q |
209 |
tact |
212 |
Q |
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|||| |
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| T |
8456157 |
tact |
8456160 |
T |
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