View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18107_high_69 (Length: 207)

Name: NF18107_high_69
Description: NF18107
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18107_high_69
NF18107_high_69
[»] chr2 (3 HSPs)
chr2 (1-193)||(16880609-16880799)
chr2 (1-193)||(17038299-17038489)
chr2 (1-99)||(3249948-3250047)
[»] chr1 (3 HSPs)
chr1 (1-141)||(21914396-21914537)
chr1 (150-192)||(28956635-28956678)
chr1 (148-192)||(21914558-21914603)
[»] chr8 (1 HSPs)
chr8 (1-79)||(27806082-27806160)
[»] chr4 (2 HSPs)
chr4 (1-89)||(34856995-34857083)
chr4 (152-192)||(34857164-34857205)
[»] chr7 (1 HSPs)
chr7 (148-193)||(36223170-36223215)
[»] chr6 (1 HSPs)
chr6 (148-193)||(12986738-12986783)
[»] chr3 (1 HSPs)
chr3 (148-192)||(43682966-43683011)


Alignment Details
Target: chr2 (Bit Score: 182; Significance: 1e-98; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 182; E-Value: 1e-98
Query Start/End: Original strand, 1 - 193
Target Start/End: Complemental strand, 16880799 - 16880609
Alignment:
Q  1 ttactcatcaaatttcttcaatccgtgatgctactcttctatatgcatgcttgcgtttttgcttctgcctttccttccagtgcgtgctctttctccaaaa 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  16880799 ttactcatcaaatttcttcaatccgtgatgctactcttctatatgcatgcttgcgtttttgcttctgcctttccttccagtgcgtgctctttctccaaaa 16880700  T
Q  101 aatgtgaaacctagctccggttgtgcccaatcgtgaatgtccaccgcgttgtgtagcgcccctctttttatatggctctggcacttatatttg 193  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  ||||||||||||||||||||||||||||||    
T  16880699 aatgtgaaacctagctccggttgtgcccaatcgtgaatgtccaccgcgttgtgtagcgccc--ctttttatatggctctggcacttatatttg 16880609  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 182; E-Value: 1e-98
Query Start/End: Original strand, 1 - 193
Target Start/End: Complemental strand, 17038489 - 17038299
Alignment:
Q  1 ttactcatcaaatttcttcaatccgtgatgctactcttctatatgcatgcttgcgtttttgcttctgcctttccttccagtgcgtgctctttctccaaaa 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  17038489 ttactcatcaaatttcttcaatccgtgatgctactcttctatatgcatgcttgcgtttttgcttctgcctttccttccagtgcgtgctctttctccaaaa 17038390  T
Q  101 aatgtgaaacctagctccggttgtgcccaatcgtgaatgtccaccgcgttgtgtagcgcccctctttttatatggctctggcacttatatttg 193  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  ||||||||||||||||||||||||||||||    
T  17038389 aatgtgaaacctagctccggttgtgcccaatcgtgaatgtccaccgcgttgtgtagcgccc--ctttttatatggctctggcacttatatttg 17038299  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 1 - 99
Target Start/End: Complemental strand, 3250047 - 3249948
Alignment:
Q  1 ttactcatcaaatttcttcaa-tccgtgatgctactcttctatatgcatgcttgcgtttttgcttctgcctttccttccagtgcgtgctctttctccaaa 99  Q
    |||||| |||||||||||||| || |||||||||||||||||||||| ||| |||||||||||||||| |||||||||||   |||||||| ||||||||    
T  3250047 ttactcttcaaatttcttcaaatctgtgatgctactcttctatatgcgtgcatgcgtttttgcttctggctttccttccataccgtgctctctctccaaa 3249948  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 94; Significance: 4e-46; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 94; E-Value: 4e-46
Query Start/End: Original strand, 1 - 141
Target Start/End: Original strand, 21914396 - 21914537
Alignment:
Q  1 ttactcatcaaatttcttcaatccgtgatgctactcttctatatgcatgcttgcgtttttgcttctgcctttccttccagtgcgtgctctttctcc-aaa 99  Q
    |||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||| || |||||||| || | |||||||||||||| |||    
T  21914396 ttactcatcaaatttcttcaatccgtgatgctactcttctatatgcgtgcgtgcgtttttgcttgtggctttcctttcattccgtgctctttctccaaaa 21914495  T
Q  100 aaatgtgaaacctagctccggttgtgcccaatcgtgaatgtc 141  Q
    ||| ||||||||||| ||| ||||||||||||||||||||||    
T  21914496 aaacgtgaaacctagatcccgttgtgcccaatcgtgaatgtc 21914537  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 150 - 192
Target Start/End: Complemental strand, 28956678 - 28956635
Alignment:
Q  150 tgtgtagcgcccct-ctttttatatggctctggcacttatattt 192  Q
    |||||||||||||| |||||||||||||||| ||||||||||||    
T  28956678 tgtgtagcgccccttctttttatatggctctcgcacttatattt 28956635  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 148 - 192
Target Start/End: Original strand, 21914558 - 21914603
Alignment:
Q  148 gttgtgtagcgcccct-ctttttatatggctctggcacttatattt 192  Q
    |||||| ||| ||||| |||||||||||||||||||||||||||||    
T  21914558 gttgtgaagcacccctactttttatatggctctggcacttatattt 21914603  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 59; Significance: 3e-25; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 59; E-Value: 3e-25
Query Start/End: Original strand, 1 - 79
Target Start/End: Original strand, 27806082 - 27806160
Alignment:
Q  1 ttactcatcaaatttcttcaatccgtgatgctactcttctatatgcatgcttgcgtttttgcttctgcctttccttcca 79  Q
    |||||||||||||||||||||||||||||||||||| ||||||||  ||| |||||||||||||||| |||||||||||    
T  27806082 ttactcatcaaatttcttcaatccgtgatgctactcatctatatgtgtgcgtgcgtttttgcttctggctttccttcca 27806160  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 53; Significance: 1e-21; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 1 - 89
Target Start/End: Original strand, 34856995 - 34857083
Alignment:
Q  1 ttactcatcaaatttcttcaatccgtgatgctactcttctatatgcatgcttgcgtttttgcttctgcctttccttccagtgcgtgctc 89  Q
    ||||||||||||||||||||||| ||||||||||| ||||| |||| ||| |||||||||||| ||| ||||||||||| | |||||||    
T  34856995 ttactcatcaaatttcttcaatctgtgatgctactgttctacatgcgtgcgtgcgtttttgctcctgactttccttccattccgtgctc 34857083  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 152 - 192
Target Start/End: Original strand, 34857164 - 34857205
Alignment:
Q  152 tgtagcgcccctc-tttttatatggctctggcacttatattt 192  Q
    ||||||||||||| ||||||||||||||||||||||||||||    
T  34857164 tgtagcgcccctcctttttatatggctctggcacttatattt 34857205  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 38; Significance: 0.000000000001; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 148 - 193
Target Start/End: Original strand, 36223170 - 36223215
Alignment:
Q  148 gttgtgtagcgcccctctttttatatggctctggcacttatatttg 193  Q
    ||||||||||||||||||||||||||||||||||| ||| ||||||    
T  36223170 gttgtgtagcgcccctctttttatatggctctggcgcttctatttg 36223215  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 38; Significance: 0.000000000001; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 148 - 193
Target Start/End: Original strand, 12986738 - 12986783
Alignment:
Q  148 gttgtgtagcgcccctctttttatatggctctggcacttatatttg 193  Q
    |||||||||| |||||||||||||||||||||||||||| ||||||    
T  12986738 gttgtgtagcacccctctttttatatggctctggcacttctatttg 12986783  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 148 - 192
Target Start/End: Complemental strand, 43683011 - 43682966
Alignment:
Q  148 gttgtgtagcgcccctc-tttttatatggctctggcacttatattt 192  Q
    ||||||||||||||||| ||||||||||||||||| ||||||||||    
T  43683011 gttgtgtagcgcccctcctttttatatggctctggaacttatattt 43682966  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University