View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18107_high_7 (Length: 646)
Name: NF18107_high_7
Description: NF18107
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18107_high_7 |
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Alignment Details
Target: chr5 (Bit Score: 329; Significance: 0; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 329; E-Value: 0
Query Start/End: Original strand, 20 - 376
Target Start/End: Original strand, 35901889 - 35902245
Alignment:
| Q |
20 |
aaccgcagtcataattttgccttaaacttaagtaaaaccaataccatagttgcaacttttcaacattatcactagactatagaatgttatgtattcattc |
119 |
Q |
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| T |
35901889 |
aaccgcagtcataattttgccttaaacttaactaaaaccaataccatagttgcaacttttcaacattatcactagactatagaatgttatgtattcattc |
35901988 |
T |
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| Q |
120 |
catttcattcaaaatccattcttcagaaagctggtgcaaagtttcttccaggcatttgtatctggctctaacaaatgagccctctccctcgctcctatag |
219 |
Q |
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| T |
35901989 |
catttcattcaaaacccattcttaagaaagctggtgcaaagtttcttccaggcatttgtatctggctctaacaaatgagccctctccctcgctcctatag |
35902088 |
T |
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| Q |
220 |
caaaagcttcctgacattttagacatcctctatgagtaaatcaatcaattcaaaatataattcaagttaatggaagaaatggtgcttgaaattgatagtg |
319 |
Q |
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| T |
35902089 |
caaaagcttcctgacatttaagacatcctctatgagtaaatcaatcaattcaaaatataattcaagttaatggaagagacggtgcttgaaattgatagtg |
35902188 |
T |
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| Q |
320 |
taatccagattgttcgatctcagatcaacgatcgagatcaattaccacgtaaaccta |
376 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
35902189 |
taatccagattgttcgatctcagatcaacgatcgagatcaattaccacgtaatccta |
35902245 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 192; E-Value: 1e-104
Query Start/End: Original strand, 427 - 639
Target Start/End: Original strand, 35902241 - 35902449
Alignment:
| Q |
427 |
tcctagttctttatgatggtcgacgtgctctaaagtaatagaaaattgaaattctctaaataaaactagaaatatattggacataccttgatgaaattac |
526 |
Q |
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| T |
35902241 |
tcctagttctttatgatggtcgacgtgctctaaagtaatagaaaattgaaattctctaaataaaactagaaat----tggacataccttgatgaaattac |
35902336 |
T |
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| Q |
527 |
gttggatgagacgatcgataagaaacaaaagaatatctttagagtactctggatgaccttggattcccataatatgatctccatatttaaacatctcaat |
626 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35902337 |
gttggatgagacgatcgataagaaacaaaagaatatctttagagtactctggatgaccttggattcccataatatgatctccatatttaaacatctcaat |
35902436 |
T |
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| Q |
627 |
tccagtattatct |
639 |
Q |
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|||||| |||||| |
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| T |
35902437 |
tccagttttatct |
35902449 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 60; Significance: 3e-25; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 552 - 639
Target Start/End: Complemental strand, 37024571 - 37024484
Alignment:
| Q |
552 |
caaaagaatatctttagagtactctggatgaccttggattcccataatatgatctccatatttaaacatctcaattccagtattatct |
639 |
Q |
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|||||| || |||||||||||||| ||||||||||| ||||||||||| |||||||||||| ||||||||||||||||||| |||||| |
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| T |
37024571 |
caaaaggatgtctttagagtactcaggatgaccttgaattcccataatgtgatctccatatctaaacatctcaattccagtcttatct |
37024484 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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