View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18107_high_9 (Length: 557)

Name: NF18107_high_9
Description: NF18107
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18107_high_9
NF18107_high_9
[»] chr3 (2 HSPs)
chr3 (13-541)||(33161262-33161794)
chr3 (13-88)||(41876077-41876152)
[»] chr5 (6 HSPs)
chr5 (17-94)||(6784681-6784758)
chr5 (17-95)||(17491340-17491418)
chr5 (17-94)||(6775579-6775656)
chr5 (13-87)||(34367073-34367147)
chr5 (17-89)||(18915713-18915785)
chr5 (17-88)||(25345980-25346051)
[»] chr2 (2 HSPs)
chr2 (15-91)||(7962255-7962331)
chr2 (16-91)||(12793899-12793974)
[»] chr1 (1 HSPs)
chr1 (16-89)||(29579116-29579189)
[»] chr4 (3 HSPs)
chr4 (17-89)||(32116302-32116374)
chr4 (17-88)||(41128265-41128336)
chr4 (17-88)||(55048404-55048475)
[»] chr8 (1 HSPs)
chr8 (17-88)||(33863577-33863648)


Alignment Details
Target: chr3 (Bit Score: 426; Significance: 0; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 426; E-Value: 0
Query Start/End: Original strand, 13 - 541
Target Start/End: Complemental strand, 33161794 - 33161262
Alignment:
Q  13 aatatgaacctgacgtgaatcgaacacgcaaccttctgatctggagtcagacgcgctaccattgcgccacagatccatttgttgttaagtcaccatctca 112  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||  |||||||||     
T  33161794 aatatgaacctgacgtgaatcgaacacgcaaccttctgatctggagtcagacgcgctaccattgcgccacagatccatttgatgttaaaccaccatctcc 33161695  T
Q  113 gttctactaataaccatcatc---------gcagaaaaactatataaacaacattttcccgccaaacgcaacaaaccaaaaaattcctatttnnnnnnnn 203  Q
    |||| ||||||||||||||||         |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||            
T  33161694 gttccactaataaccatcatcaccatcatcgcagaaaa-ctatataaacaacattttcccgccaaacgcaacaaaccaaaaaattcctattttctctctc 33161596  T
Q  204 nnnnnatctcgtcttggagatagaatcttgaattttcgcgggaaaatcaatcaatggaagaagaaagctccgaattcatcgacatcaagctttcttctcc 303  Q
         ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33161595 t----atctcttcttggagatagaatcttgaattttcgcgggaaaatcaatcaatggaagaagaaagctccgaattcatcgacatcaagctttcttctcc 33161500  T
Q  304 ggcgaagaagctcccactcgatcttcctcaagatccgcagctcaaatcctgccgccgtctccgccgcagaggtgacacatgggtaatttctgttatggtg 403  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||    
T  33161499 ggcgaagaagctcccactcgatcttcctcaagatccgcagctcaaatcctgccgtcgtctccgccgcagaggtgacacatgggtaatttctgttatggtg 33161400  T
Q  404 ttaatccaactagggttcttcattgccacgatgctcgtcaacgattgcttcaccaattctcacggtgattgcacttttccatctcttggaaggttctcgt 503  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33161399 ttaatccaactagggttcttcattgccacgatgctcgtcaacgattgcttcaccaattctcacggtgattgcacttttccatctcttggaaggttctcgt 33161300  T
Q  504 ttcagcctctcgctgaaaatcctctgttaggtccttcc 541  Q
    ||||||||||||||||||||||||||||||||||||||    
T  33161299 ttcagcctctcgctgaaaatcctctgttaggtccttcc 33161262  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 13 - 88
Target Start/End: Original strand, 41876077 - 41876152
Alignment:
Q  13 aatatgaacctgacgtgaatcgaacacgcaaccttctgatctggagtcagacgcgctaccattgcgccacagatcc 88  Q
    |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  41876077 aatatgaacctgacatgaatcgaacacgcaaccttctgatctggagtcagacgcgctaccattgcgccacagatcc 41876152  T

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Target: chr5 (Bit Score: 78; Significance: 4e-36; HSPs: 6)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 78; E-Value: 4e-36
Query Start/End: Original strand, 17 - 94
Target Start/End: Original strand, 6784681 - 6784758
Alignment:
Q  17 tgaacctgacgtgaatcgaacacgcaaccttctgatctggagtcagacgcgctaccattgcgccacagatccatttgt 94  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6784681 tgaacctgacgtgaatcgaacacgcaaccttctgatctggagtcagacgcgctaccattgcgccacagatccatttgt 6784758  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 75; E-Value: 3e-34
Query Start/End: Original strand, 17 - 95
Target Start/End: Complemental strand, 17491418 - 17491340
Alignment:
Q  17 tgaacctgacgtgaatcgaacacgcaaccttctgatctggagtcagacgcgctaccattgcgccacagatccatttgtt 95  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  17491418 tgaacctgacgtgaatcgaacacgcaaccttctgatctggagtcagacgcgctaccattgcgccacagatccacttgtt 17491340  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 74; E-Value: 1e-33
Query Start/End: Original strand, 17 - 94
Target Start/End: Original strand, 6775579 - 6775656
Alignment:
Q  17 tgaacctgacgtgaatcgaacacgcaaccttctgatctggagtcagacgcgctaccattgcgccacagatccatttgt 94  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  6775579 tgaacctgacgtgaatcgaacacgcaaccttctgatctggagtcagacgcgctaccattgcgccacagatccacttgt 6775656  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 71; E-Value: 7e-32
Query Start/End: Original strand, 13 - 87
Target Start/End: Original strand, 34367073 - 34367147
Alignment:
Q  13 aatatgaacctgacgtgaatcgaacacgcaaccttctgatctggagtcagacgcgctaccattgcgccacagatc 87  Q
    ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  34367073 aatatgaacctgatgtgaatcgaacacgcaaccttctgatctggagtcagacgcgctaccattgcgccacagatc 34367147  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 65; E-Value: 3e-28
Query Start/End: Original strand, 17 - 89
Target Start/End: Complemental strand, 18915785 - 18915713
Alignment:
Q  17 tgaacctgacgtgaatcgaacacgcaaccttctgatctggagtcagacgcgctaccattgcgccacagatcca 89  Q
    |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  18915785 tgaacccgacgtgaatcgaacacgcaaccttctgatctggagtcagacgcgctaccattgcgccacggatcca 18915713  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 17 - 88
Target Start/End: Complemental strand, 25346051 - 25345980
Alignment:
Q  17 tgaacctgacgtgaatcgaacacgcaaccttctgatctggagtcagacgcgctaccattgcgccacagatcc 88  Q
    |||||| |||| ||||| ||||||||||||| |||||||||||||||||||||||||||||||||| |||||    
T  25346051 tgaacccgacgagaatcaaacacgcaaccttttgatctggagtcagacgcgctaccattgcgccacggatcc 25345980  T

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Target: chr2 (Bit Score: 77; Significance: 2e-35; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 77; E-Value: 2e-35
Query Start/End: Original strand, 15 - 91
Target Start/End: Original strand, 7962255 - 7962331
Alignment:
Q  15 tatgaacctgacgtgaatcgaacacgcaaccttctgatctggagtcagacgcgctaccattgcgccacagatccatt 91  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  7962255 tatgaacctgacgtgaatcgaacacgcaaccttctgatctggagtcagacgcgctaccattgcgccacagatccatt 7962331  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 76; E-Value: 7e-35
Query Start/End: Original strand, 16 - 91
Target Start/End: Complemental strand, 12793974 - 12793899
Alignment:
Q  16 atgaacctgacgtgaatcgaacacgcaaccttctgatctggagtcagacgcgctaccattgcgccacagatccatt 91  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  12793974 atgaacctgacgtgaatcgaacacgcaaccttctgatctggagtcagacgcgctaccattgcgccacagatccatt 12793899  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 74; Significance: 1e-33; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 74; E-Value: 1e-33
Query Start/End: Original strand, 16 - 89
Target Start/End: Original strand, 29579116 - 29579189
Alignment:
Q  16 atgaacctgacgtgaatcgaacacgcaaccttctgatctggagtcagacgcgctaccattgcgccacagatcca 89  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  29579116 atgaacctgacgtgaatcgaacacgcaaccttctgatctggagtcagacgcgctaccattgcgccacagatcca 29579189  T

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Target: chr4 (Bit Score: 73; Significance: 4e-33; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 73; E-Value: 4e-33
Query Start/End: Original strand, 17 - 89
Target Start/End: Complemental strand, 32116374 - 32116302
Alignment:
Q  17 tgaacctgacgtgaatcgaacacgcaaccttctgatctggagtcagacgcgctaccattgcgccacagatcca 89  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  32116374 tgaacctgacgtgaatcgaacacgcaaccttctgatctggagtcagacgcgctaccattgcgccacagatcca 32116302  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 17 - 88
Target Start/End: Original strand, 41128265 - 41128336
Alignment:
Q  17 tgaacctgacgtgaatcgaacacgcaaccttctgatctggagtcagacgcgctaccattgcgccacagatcc 88  Q
    |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  41128265 tgaacccgacgtgaatcgaacacgcaaccttctgatctggagtcagacgcgctaccattgcgccacggatcc 41128336  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 17 - 88
Target Start/End: Original strand, 55048404 - 55048475
Alignment:
Q  17 tgaacctgacgtgaatcgaacacgcaaccttctgatctggagtcagacgcgctaccattgcgccacagatcc 88  Q
    |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  55048404 tgaacccgacgtgaatcgaacacgcaaccttctgatctggagtcagacgcgctaccattgcgccacggatcc 55048475  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 72; Significance: 2e-32; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 17 - 88
Target Start/End: Complemental strand, 33863648 - 33863577
Alignment:
Q  17 tgaacctgacgtgaatcgaacacgcaaccttctgatctggagtcagacgcgctaccattgcgccacagatcc 88  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33863648 tgaacctgacgtgaatcgaacacgcaaccttctgatctggagtcagacgcgctaccattgcgccacagatcc 33863577  T

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