View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18107_low_11 (Length: 551)

Name: NF18107_low_11
Description: NF18107
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18107_low_11
NF18107_low_11
[»] chr8 (5 HSPs)
chr8 (10-325)||(41139714-41140029)
chr8 (437-536)||(41139510-41139609)
chr8 (148-260)||(24566440-24566547)
chr8 (155-188)||(2446019-2446052)
chr8 (148-188)||(32063484-32063524)
[»] chr5 (2 HSPs)
chr5 (201-257)||(15259735-15259791)
chr5 (202-259)||(9829913-9829970)
[»] chr4 (4 HSPs)
chr4 (224-255)||(55300871-55300902)
chr4 (214-260)||(9902735-9902781)
chr4 (206-260)||(16020143-16020197)
chr4 (220-260)||(30534713-30534753)
[»] chr3 (3 HSPs)
chr3 (220-255)||(25199251-25199286)
chr3 (206-260)||(15543185-15543239)
chr3 (148-188)||(35220587-35220627)
[»] chr7 (1 HSPs)
chr7 (143-188)||(44533753-44533798)
[»] chr1 (2 HSPs)
chr1 (202-255)||(28552039-28552092)
chr1 (144-177)||(30026977-30027010)


Alignment Details
Target: chr8 (Bit Score: 249; Significance: 1e-138; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 249; E-Value: 1e-138
Query Start/End: Original strand, 10 - 325
Target Start/End: Complemental strand, 41140029 - 41139714
Alignment:
Q  10 acatcatcatttggacttgaatctaaaacattaccgttatgtttgtgagttttaggtggtgtttatcatctcatccacatctaaagacnnnnnnncggaa 109  Q
    ||||| |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||       |||||    
T  41140029 acatcttcatttggacttaaatctaaaacattaccgttatgtttgtgagttttaggtggtgtttgtcatctcatccacatctaaagacaaaaaaacggaa 41139930  T
Q  110 tgtaaaagggattgacaaacataacatagattttcgtggtccctcaacttaatttcagataacgattttgtcatttatcnnnnnnnnnnacgtcattttg 209  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||          |||||||||||    
T  41139929 tgtaaaagggattgacaaacataacatagattttcgtggtccctcaacttaatttcagataacgattttgtcatttatcttttttttttacgtcattttg 41139830  T
Q  210 atcattttagtcaatttgcatatgaatttttaagattaaaatctatgatttattttcccgcgagttctcggattttatatctacggtcatttgctcatat 309  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||    
T  41139829 atcattttagtcaatttgcatatgaatttttaagattaaaatctatgatttattttcccgcgagttctcggattttatatctatggtcatttgctcatat 41139730  T
Q  310 ttgcatatgaatctta 325  Q
    ||||||||||||||||    
T  41139729 ttgcatatgaatctta 41139714  T

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Target: chr8; HSP #2
Raw Score: 84; E-Value: 1e-39
Query Start/End: Original strand, 437 - 536
Target Start/End: Complemental strand, 41139609 - 41139510
Alignment:
Q  437 acgagtgtaattttgccaaaaggaaatttatatgaatttacttttattatcagctggtagttttcttttgcttttcacttacatcatgagaaaattatgt 536  Q
    ||||||||||||||||||||||||| |||||||||||||||||||||||||| || |||| |||||||||||||||||||||||||||||||||||||||    
T  41139609 acgagtgtaattttgccaaaaggaattttatatgaatttacttttattatcaactcgtagatttcttttgcttttcacttacatcatgagaaaattatgt 41139510  T

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Target: chr8; HSP #3
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 148 - 260
Target Start/End: Original strand, 24566440 - 24566547
Alignment:
Q  148 gtccctcaacttaatttcagataacgattttgtcatttatcnnnnnnnnnnacgtcattttgatcattttagtcaatttgcatatgaatttttaagatta 247  Q
    |||||||||||||||||||| ||||||||||||| ||||||            ||||||||| |  |||||||| ||||||||||| ||||||||| ||     
T  24566440 gtccctcaacttaatttcaggtaacgattttgtcctttatcgtttttt-----gtcattttggtacttttagtccatttgcatatggatttttaagcttt 24566534  T
Q  248 aaatctatgattt 260  Q
    |||||||||||||    
T  24566535 aaatctatgattt 24566547  T

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Target: chr8; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 155 - 188
Target Start/End: Original strand, 2446019 - 2446052
Alignment:
Q  155 aacttaatttcagataacgattttgtcatttatc 188  Q
    |||||||||||||||||||||||||||| |||||    
T  2446019 aacttaatttcagataacgattttgtcacttatc 2446052  T

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Target: chr8; HSP #5
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 148 - 188
Target Start/End: Original strand, 32063484 - 32063524
Alignment:
Q  148 gtccctcaacttaatttcagataacgattttgtcatttatc 188  Q
    |||||| ||||||||||||||||||||||| ||| ||||||    
T  32063484 gtcccttaacttaatttcagataacgatttcgtcttttatc 32063524  T

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Target: chr5 (Bit Score: 37; Significance: 0.00000000001; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 201 - 257
Target Start/End: Original strand, 15259735 - 15259791
Alignment:
Q  201 gtcattttgatcattttagtcaatttgcatatgaatttttaagattaaaatctatga 257  Q
    |||||||| ||||||||   |||||||||||||||||||||||||| ||||||||||    
T  15259735 gtcattttcatcattttgaacaatttgcatatgaatttttaagatttaaatctatga 15259791  T

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Target: chr5; HSP #2
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 202 - 259
Target Start/End: Complemental strand, 9829970 - 9829913
Alignment:
Q  202 tcattttgatcattttagtcaatttgcatatgaatttttaagattaaaatctatgatt 259  Q
    ||||||| ||||||||  ||||||||||| ||||||||||||||| |||| |||||||    
T  9829970 tcattttcatcattttgatcaatttgcatgtgaatttttaagattcaaatttatgatt 9829913  T

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Target: chr4 (Bit Score: 32; Significance: 0.00000001; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 224 - 255
Target Start/End: Original strand, 55300871 - 55300902
Alignment:
Q  224 tttgcatatgaatttttaagattaaaatctat 255  Q
    ||||||||||||||||||||||||||||||||    
T  55300871 tttgcatatgaatttttaagattaaaatctat 55300902  T

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Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 214 - 260
Target Start/End: Original strand, 9902735 - 9902781
Alignment:
Q  214 ttttagtcaatttgcatatgaatttttaagattaaaatctatgattt 260  Q
    |||| |||||||| |||||||||||||||| ||||||| ||||||||    
T  9902735 tttttgtcaattttcatatgaatttttaagtttaaaatttatgattt 9902781  T

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Target: chr4; HSP #3
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 206 - 260
Target Start/End: Complemental strand, 16020197 - 16020143
Alignment:
Q  206 tttgatcattttagtcaatttgcatatgaatttttaagattaaaatctatgattt 260  Q
    |||| ||||||| ||| |||| |||||||||||||||| ||||||| ||||||||    
T  16020197 tttggtcatttttgtccattttcatatgaatttttaagcttaaaatttatgattt 16020143  T

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Target: chr4; HSP #4
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 220 - 260
Target Start/End: Complemental strand, 30534753 - 30534713
Alignment:
Q  220 tcaatttgcatatgaatttttaagattaaaatctatgattt 260  Q
    |||||||||||||| ||||| |||||| |||||||||||||    
T  30534753 tcaatttgcatatggattttaaagattcaaatctatgattt 30534713  T

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Target: chr3 (Bit Score: 32; Significance: 0.00000001; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 220 - 255
Target Start/End: Original strand, 25199251 - 25199286
Alignment:
Q  220 tcaatttgcatatgaatttttaagattaaaatctat 255  Q
    ||||||||||||||||||||||||||| ||||||||    
T  25199251 tcaatttgcatatgaatttttaagattcaaatctat 25199286  T

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Target: chr3; HSP #2
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 206 - 260
Target Start/End: Complemental strand, 15543239 - 15543185
Alignment:
Q  206 tttgatcattttagtcaatttgcatatgaatttttaagattaaaatctatgattt 260  Q
    |||||||||||| ||| |||| |||||||||||||||| |||||||  |||||||    
T  15543239 tttgatcatttttgtccattttcatatgaatttttaagcttaaaattcatgattt 15543185  T

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Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 148 - 188
Target Start/End: Original strand, 35220587 - 35220627
Alignment:
Q  148 gtccctcaacttaatttcagataacgattttgtcatttatc 188  Q
    |||||| |||||||||||||||||| |||| ||||||||||    
T  35220587 gtcccttaacttaatttcagataacaatttcgtcatttatc 35220627  T

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Target: chr7 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 143 - 188
Target Start/End: Complemental strand, 44533798 - 44533753
Alignment:
Q  143 tcgtggtccctcaacttaatttcagataacgattttgtcatttatc 188  Q
    |||| |||||| |||||||||||||||||| |||||||| ||||||    
T  44533798 tcgtcgtcccttaacttaatttcagataaccattttgtcctttatc 44533753  T

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Target: chr1 (Bit Score: 30; Significance: 0.0000002; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 202 - 255
Target Start/End: Original strand, 28552039 - 28552092
Alignment:
Q  202 tcattttgatcattttagtcaatttgcatatgaatttttaagattaaaatctat 255  Q
    |||||||  |||||||  ||||||| ||||||||||||||||||| ||||||||    
T  28552039 tcattttcttcattttgatcaatttacatatgaatttttaagattcaaatctat 28552092  T

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Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 144 - 177
Target Start/End: Original strand, 30026977 - 30027010
Alignment:
Q  144 cgtggtccctcaacttaatttcagataacgattt 177  Q
    |||||||||| |||||||||||||||||||||||    
T  30026977 cgtggtcccttaacttaatttcagataacgattt 30027010  T

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