View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18107_low_16 (Length: 503)

Name: NF18107_low_16
Description: NF18107
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18107_low_16
NF18107_low_16
[»] chr4 (12 HSPs)
chr4 (146-366)||(48816062-48816282)
chr4 (18-108)||(48816320-48816410)
chr4 (163-286)||(15825361-15825484)
chr4 (160-329)||(48807523-48807690)
chr4 (18-102)||(48807763-48807847)
chr4 (360-488)||(48815906-48816029)
chr4 (165-268)||(48789840-48789943)
chr4 (18-79)||(15825579-15825640)
chr4 (18-79)||(48790048-48790109)
chr4 (163-271)||(48834277-48834385)
chr4 (368-404)||(48806145-48806181)
chr4 (31-79)||(48834101-48834149)


Alignment Details
Target: chr4 (Bit Score: 213; Significance: 1e-116; HSPs: 12)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 213; E-Value: 1e-116
Query Start/End: Original strand, 146 - 366
Target Start/End: Complemental strand, 48816282 - 48816062
Alignment:
Q  146 gtacatctactgacaggtcgaagaatctagaaccgaagtgaatttgattgtaagaacagtagtcaccgtgggaaactacgacaatgttttagattgggag 245  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  48816282 gtacatctactgacaggtcgaagaatctagaaccgaagtgaatttgattgtaagaacagtagtcaccgtgggaaactacgacaatgttttagattgggag 48816183  T
Q  246 ttcaaagcaagtggttctatcaagcctgctgtaagtatttagttttgtttatttgttactccatgtttactaaatgttttatatagataattatatgtaa 345  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  48816182 ttcaaagcaagtggttctatcaagcctgctgtaagtatttagttttgtttatttgttactccatgtttactaaatgttttatatagataattatacgtaa 48816083  T
Q  346 gtgtaagtgatctcataatta 366  Q
    ||||||||||||||| |||||    
T  48816082 gtgtaagtgatctcacaatta 48816062  T

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Target: chr4; HSP #2
Raw Score: 91; E-Value: 7e-44
Query Start/End: Original strand, 18 - 108
Target Start/End: Complemental strand, 48816410 - 48816320
Alignment:
Q  18 aacaatatggtaatatcatgtggcgtcacactgaaactggcattcctaatgaattcgtaagagtttttcctgcaaccaactaatttaacta 108  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  48816410 aacaatatggtaatatcatgtggcgtcacactgaaactggcattcctaatgaattcgtaagagtttttcctgcaaccaactaatttaacta 48816320  T

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Target: chr4; HSP #3
Raw Score: 84; E-Value: 1e-39
Query Start/End: Original strand, 163 - 286
Target Start/End: Complemental strand, 15825484 - 15825361
Alignment:
Q  163 tcgaagaatctagaaccgaagtgaatttgattgtaagaacagtagtcaccgtgggaaactacgacaatgttttagattgggagttcaaagcaagtggttc 262  Q
    |||||||||| ||||||||||||||||||||||| ||||| |||||||| || |||||||| ||||||||||||||||||||||||||| ||||||||||    
T  15825484 tcgaagaatcaagaaccgaagtgaatttgattgttagaaccgtagtcactgttggaaactatgacaatgttttagattgggagttcaaaacaagtggttc 15825385  T
Q  263 tatcaagcctgctgtaagtattta 286  Q
     ||||||||  |||||||||||||    
T  15825384 catcaagccctctgtaagtattta 15825361  T

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Target: chr4; HSP #4
Raw Score: 78; E-Value: 4e-36
Query Start/End: Original strand, 160 - 329
Target Start/End: Complemental strand, 48807690 - 48807523
Alignment:
Q  160 aggtcgaagaatctagaaccgaagtgaatttgattgtaagaacagtagtcaccgtgggaaactacgacaatgttttagattgggagttcaaagcaagtgg 259  Q
    |||| |||||||||||||||||||||||||||||||||||||||||||||||||  ||||| || |||||| ||||||| |||||||||||| |||||||    
T  48807690 aggttgaagaatctagaaccgaagtgaatttgattgtaagaacagtagtcaccgcaggaaaatatgacaatattttagaatgggagttcaaaacaagtgg 48807591  T
Q  260 ttctatcaagcctgctgtaagtatttagttttgtttatttgttactccatgtttactaaatgttttatat 329  Q
    ||| || |||||  | |||| ||||||| ||| ||||||||||  || | ||||||||| ||||||||||    
T  48807590 ttcgataaagccctccgtaa-tatttag-tttatttatttgtttttctaggtttactaattgttttatat 48807523  T

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Target: chr4; HSP #5
Raw Score: 77; E-Value: 2e-35
Query Start/End: Original strand, 18 - 102
Target Start/End: Complemental strand, 48807847 - 48807763
Alignment:
Q  18 aacaatatggtaatatcatgtggcgtcacactgaaactggcattcctaatgaattcgtaagagtttttcctgcaaccaactaatt 102  Q
    ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| ||||||||||||||||    
T  48807847 aacaatatggtaatatcatgtggcgtcacactgaaactgacattcctaatgaattcgtaagagtttttactgcaaccaactaatt 48807763  T

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Target: chr4; HSP #6
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 360 - 488
Target Start/End: Complemental strand, 48816029 - 48815906
Alignment:
Q  360 ataattacaaaacagattttgtaataaaataatacatataa-aaaattcgtagtgtgttactggaagataagattttannnnnnngaaaagattggaaga 458  Q
    ||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||        ||||||      |||    
T  48816029 ataattacaaaacagattttgtaataaaataatacatataaaaaaattcgtagagtgttactggaagataagattttctttttttgaaaag------aga 48815936  T
Q  459 taagatatggttcttcataaacacgttcat 488  Q
    ||||||||||||||||||||||||||||||    
T  48815935 taagatatggttcttcataaacacgttcat 48815906  T

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Target: chr4; HSP #7
Raw Score: 68; E-Value: 4e-30
Query Start/End: Original strand, 165 - 268
Target Start/End: Complemental strand, 48789943 - 48789840
Alignment:
Q  165 gaagaatctagaaccgaagtgaatttgattgtaagaacagtagtcaccgtgggaaactacgacaatgttttagattgggagttcaaagcaagtggttcta 264  Q
    ||||| |||||||| ||||||||||||||||| ||||| |||||||| || |||||||| ||||||||||||||||||||||||||| |||||||||| |    
T  48789943 gaagagtctagaactgaagtgaatttgattgttagaactgtagtcacggtaggaaactatgacaatgttttagattgggagttcaaaacaagtggttcca 48789844  T
Q  265 tcaa 268  Q
    ||||    
T  48789843 tcaa 48789840  T

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Target: chr4; HSP #8
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 18 - 79
Target Start/End: Complemental strand, 15825640 - 15825579
Alignment:
Q  18 aacaatatggtaatatcatgtggcgtcacactgaaactggcattcctaatgaattcgtaaga 79  Q
    |||||||||||| ||| ||||||||||||||||||||| |||||||||||||||| ||||||    
T  15825640 aacaatatggtagtattatgtggcgtcacactgaaactagcattcctaatgaatttgtaaga 15825579  T

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Target: chr4; HSP #9
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 18 - 79
Target Start/End: Complemental strand, 48790109 - 48790048
Alignment:
Q  18 aacaatatggtaatatcatgtggcgtcacactgaaactggcattcctaatgaattcgtaaga 79  Q
    ||||||||| || ||| |||||||||||||||||||||||||||||| ||||||| ||||||    
T  48790109 aacaatatgatagtattatgtggcgtcacactgaaactggcattcctgatgaatttgtaaga 48790048  T

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Target: chr4; HSP #10
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 163 - 271
Target Start/End: Original strand, 48834277 - 48834385
Alignment:
Q  163 tcgaagaatctagaaccgaagtgaatttgattgtaagaacagtagtcaccgtgggaaactacgacaatgttttagattgggagttcaaagcaagtggttc 262  Q
    |||||||||| ||||||||||| || ||||| || || |  ||||| || || || ||||| |||||  |  ||||||||||||||||||||||||||||    
T  48834277 tcgaagaatcaagaaccgaagtaaacttgatagtgaggagtgtagttacagttggcaactatgacaacatcatagattgggagttcaaagcaagtggttc 48834376  T
Q  263 tatcaagcc 271  Q
     ||||||||    
T  48834377 catcaagcc 48834385  T

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Target: chr4; HSP #11
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 368 - 404
Target Start/End: Complemental strand, 48806181 - 48806145
Alignment:
Q  368 aaaacagattttgtaataaaataatacatataaaaaa 404  Q
    ||||||||||||||||||||||||| |||||||||||    
T  48806181 aaaacagattttgtaataaaataatgcatataaaaaa 48806145  T

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Target: chr4; HSP #12
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 31 - 79
Target Start/End: Original strand, 48834101 - 48834149
Alignment:
Q  31 tatcatgtggcgtcacactgaaactggcattcctaatgaattcgtaaga 79  Q
    ||||||||||||||||| |||||| |||||| || ||||||||||||||    
T  48834101 tatcatgtggcgtcacattgaaaccggcatttctgatgaattcgtaaga 48834149  T

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