View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18107_low_17 (Length: 502)

Name: NF18107_low_17
Description: NF18107
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18107_low_17
NF18107_low_17
[»] chr5 (10 HSPs)
chr5 (31-483)||(4273431-4273883)
chr5 (89-158)||(20982251-20982321)
chr5 (123-158)||(23137366-23137401)
chr5 (57-157)||(11457008-11457111)
chr5 (89-158)||(26516182-26516252)
chr5 (121-154)||(36539158-36539191)
chr5 (109-158)||(37873971-37874020)
chr5 (130-158)||(1550812-1550840)
chr5 (130-158)||(7026411-7026439)
chr5 (123-155)||(32222901-32222933)
[»] chr4 (8 HSPs)
chr4 (299-486)||(41211086-41211273)
chr4 (208-290)||(41211373-41211455)
chr4 (109-158)||(33640992-33641042)
chr4 (90-158)||(46053584-46053653)
chr4 (130-158)||(6427918-6427946)
chr4 (122-158)||(8422987-8423023)
chr4 (129-157)||(40709537-40709565)
chr4 (109-152)||(55437420-55437464)
[»] chr6 (15 HSPs)
chr6 (208-291)||(10151245-10151328)
chr6 (109-158)||(4247220-4247270)
chr6 (43-120)||(10400192-10400273)
chr6 (123-158)||(7268050-7268085)
chr6 (123-157)||(4003751-4003785)
chr6 (35-77)||(29274287-29274329)
chr6 (124-158)||(31807978-31808012)
chr6 (44-101)||(1904762-1904818)
chr6 (44-101)||(1908995-1909051)
chr6 (90-158)||(3155060-3155129)
chr6 (129-158)||(14340960-14340989)
chr6 (36-158)||(2206474-2206601)
chr6 (123-155)||(8470124-8470156)
chr6 (33-77)||(22742336-22742380)
chr6 (130-158)||(34404322-34404350)
[»] chr8 (4 HSPs)
chr8 (89-154)||(43208249-43208315)
chr8 (33-77)||(45071172-45071216)
chr8 (131-160)||(3179652-3179681)
chr8 (123-155)||(6950223-6950255)
[»] chr7 (7 HSPs)
chr7 (43-158)||(49060424-49060544)
chr7 (38-77)||(23918927-23918966)
chr7 (30-77)||(48157173-48157220)
chr7 (130-158)||(657842-657870)
chr7 (33-77)||(28165061-28165105)
chr7 (122-158)||(28691964-28692000)
chr7 (130-158)||(39539904-39539932)
[»] scaffold0426 (1 HSPs)
scaffold0426 (123-158)||(4027-4062)
[»] chr3 (6 HSPs)
chr3 (123-158)||(21574376-21574411)
chr3 (123-158)||(37308216-37308251)
chr3 (106-154)||(23785141-23785190)
chr3 (129-158)||(34857395-34857424)
chr3 (64-120)||(659910-659965)
chr3 (122-158)||(44240047-44240083)
[»] chr2 (4 HSPs)
chr2 (34-77)||(7103540-7103583)
chr2 (89-159)||(10198594-10198665)
chr2 (122-158)||(5752750-5752786)
chr2 (128-160)||(5826142-5826174)
[»] chr1 (4 HSPs)
chr1 (128-158)||(16322726-16322756)
chr1 (35-77)||(27738238-27738280)
chr1 (35-77)||(34179930-34179972)
chr1 (123-157)||(44936741-44936775)


Alignment Details
Target: chr5 (Bit Score: 453; Significance: 0; HSPs: 10)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 453; E-Value: 0
Query Start/End: Original strand, 31 - 483
Target Start/End: Original strand, 4273431 - 4273883
Alignment:
Q  31 tgtaaaaacagattatagcttattttaaaacaatttgactttatttttatctttcgttaatagcttatacagaactatttatatgataagaattatacta 130  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4273431 tgtaaaaacagattatagcttattttaaaacaatttgactttatttttatctttcgttaatagcttatacagaactatttatatgataagaattatacta 4273530  T
Q  131 taagcacttaattaagttgtttatccaacttagggcctaaaactacagttggcagtgattatgaaatattattatacacttacaataggcttgccagtca 230  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4273531 taagcacttaattaagttgtttatccaacttagggcctaaaactacagttggcagtgattatgaaatattattatacacttacaataggcttgccagtca 4273630  T
Q  231 caactgctggtgaatgaccatgaaactttgaatattcatcaagaatccaagccattgtctgtgaattagttcccatatcaggggcaggaacatccctatg 330  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4273631 caactgctggtgaatgaccatgaaactttgaatattcatcaagaatccaagccattgtctgtgaattagttcccatatcaggggcaggaacatccctatg 4273730  T
Q  331 aatgccaatgaggtcatgaatcttttgggtgaaaacacgagtgagacgttctagctcactgatgctcagatcctttgggttgcagccaattccgcccttt 430  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4273731 aatgccaatgaggtcatgaatcttttgggtgaaaacacgagtgagacgttctagctcactgatgctcagatcctttgggttgcagccaattccgcccttt 4273830  T
Q  431 gctcctccgtatggaatgtctaccacagctgtcttccatgtcattagctgagc 483  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4273831 gctcctccgtatggaatgtctaccacagctgtcttccatgtcattagctgagc 4273883  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 89 - 158
Target Start/End: Original strand, 20982251 - 20982321
Alignment:
Q  89 aatagcttatacagaactatttatatgataagaa-ttatactataagcacttaattaagttgtttatccaa 158  Q
    ||||||||||||| ||  | |||||||||||| | |||| ||||||||||||||| |||||||||||||||    
T  20982251 aatagcttatacataagcacttatatgataagcacttatgctataagcacttaatgaagttgtttatccaa 20982321  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 123 - 158
Target Start/End: Complemental strand, 23137401 - 23137366
Alignment:
Q  123 ttatactataagcacttaattaagttgtttatccaa 158  Q
    |||||||||||||||| |||||||||||||||||||    
T  23137401 ttatactataagcactcaattaagttgtttatccaa 23137366  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 57 - 157
Target Start/End: Complemental strand, 11457111 - 11457008
Alignment:
Q  57 aaaacaatttgactttatttttatctttcgtta---atagcttatacagaactatttatatgataag-aattatactataagcacttaattaagttgttt 152  Q
    ||||||||||||||||| || ||||||||||||   | |||||||||| ||  |||| ||||||||| | |||| |||||||| ||| |||||| |||||    
T  11457111 aaaacaatttgacttta-ttatatctttcgttatagaaagcttatacataaacatttgtatgataagcacttatgctataagcgcttgattaagctgttt 11457013  T
Q  153 atcca 157  Q
    |||||    
T  11457012 atcca 11457008  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 89 - 158
Target Start/End: Complemental strand, 26516252 - 26516182
Alignment:
Q  89 aatagcttatacagaactatttatatgataagaa-ttatactataagcacttaattaagttgtttatccaa 158  Q
    ||||||||||||| ||  | ||||||||||||   |||| |||||||| ||||||||||||||||||||||    
T  26516252 aatagcttatacataagcacttatatgataagcgcttatgctataagcgcttaattaagttgtttatccaa 26516182  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 121 - 154
Target Start/End: Complemental strand, 36539191 - 36539158
Alignment:
Q  121 aattatactataagcacttaattaagttgtttat 154  Q
    ||||||||||||||||||||||||||| ||||||    
T  36539191 aattatactataagcacttaattaagtagtttat 36539158  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 109 - 158
Target Start/End: Original strand, 37873971 - 37874020
Alignment:
Q  109 ttatatgataagaattatactataagcacttaattaagttgtttatccaa 158  Q
    |||| ||||||| || || |||||||||||||||||||| ||||||||||    
T  37873971 ttatgtgataaggatcatgctataagcacttaattaagtggtttatccaa 37874020  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 130 - 158
Target Start/End: Complemental strand, 1550840 - 1550812
Alignment:
Q  130 ataagcacttaattaagttgtttatccaa 158  Q
    |||||||||||||||||||||||||||||    
T  1550840 ataagcacttaattaagttgtttatccaa 1550812  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 130 - 158
Target Start/End: Original strand, 7026411 - 7026439
Alignment:
Q  130 ataagcacttaattaagttgtttatccaa 158  Q
    |||||||||||||||||||||||||||||    
T  7026411 ataagcacttaattaagttgtttatccaa 7026439  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 123 - 155
Target Start/End: Complemental strand, 32222933 - 32222901
Alignment:
Q  123 ttatactataagcacttaattaagttgtttatc 155  Q
    |||||||||||||||||||||||| ||||||||    
T  32222933 ttatactataagcacttaattaagctgtttatc 32222901  T

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Target: chr4 (Bit Score: 96; Significance: 7e-47; HSPs: 8)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 96; E-Value: 7e-47
Query Start/End: Original strand, 299 - 486
Target Start/End: Complemental strand, 41211273 - 41211086
Alignment:
Q  299 gttcccatatcaggggcaggaacatccctatgaatgccaatgaggtcatgaatcttttgggtgaaaacacgagtgagacgttctagctcactgatgctca 398  Q
    |||||||||||||| || |||||||| |  |||| ||| || |  ||||||||||||||||||||||| ||||| |||||||||| ||||||||||||||    
T  41211273 gttcccatatcaggagctggaacatctcgctgaacgccgattaaatcatgaatcttttgggtgaaaacccgagttagacgttctaactcactgatgctca 41211174  T
Q  399 gatcctttgggttgcagccaattccgccctttgctcctccgtatggaatgtctaccacagctgtcttccatgtcattagctgagctag 486  Q
    ||||| | |||||||| |||||||| |||||||| ||||| || ||||||||| | |||||||||||||||||||| |||||||||||    
T  41211173 gatccctcgggttgcaaccaattccaccctttgcacctccataaggaatgtctgctacagctgtcttccatgtcataagctgagctag 41211086  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 208 - 290
Target Start/End: Complemental strand, 41211455 - 41211373
Alignment:
Q  208 acttacaataggcttgccagtcacaactgctggtgaatgaccatgaaactttgaatattcatcaagaatccaagccattgtct 290  Q
    ||||||||||||||| || |||||||| || || ||||| |||||||| || ||||| ||||| |||||||| ||||| ||||    
T  41211455 acttacaataggctttccggtcacaacagcaggcgaatgtccatgaaatttagaatactcatctagaatccatgccatggtct 41211373  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 109 - 158
Target Start/End: Complemental strand, 33641042 - 33640992
Alignment:
Q  109 ttatatgataaga-attatactataagcacttaattaagttgtttatccaa 158  Q
    ||||||||||||  ||||| ||||||||||||||||||| |||||||||||    
T  33641042 ttatatgataagcgattattctataagcacttaattaagctgtttatccaa 33640992  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 90 - 158
Target Start/End: Complemental strand, 46053653 - 46053584
Alignment:
Q  90 atagcttatacagaactatttatatgataagaatt-atactataagcacttaattaagttgtttatccaa 158  Q
    |||||||||||| || || |||||||||||| | | || |||||||| |||||||||| |||||||||||    
T  46053653 atagcttatacataagtacttatatgataagtactcatgctataagcgcttaattaagctgtttatccaa 46053584  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 130 - 158
Target Start/End: Complemental strand, 6427946 - 6427918
Alignment:
Q  130 ataagcacttaattaagttgtttatccaa 158  Q
    |||||||||||||||||||||||||||||    
T  6427946 ataagcacttaattaagttgtttatccaa 6427918  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 122 - 158
Target Start/End: Original strand, 8422987 - 8423023
Alignment:
Q  122 attatactataagcacttaattaagttgtttatccaa 158  Q
    ||||| |||||| ||||||||||||||||||||||||    
T  8422987 attatgctataaacacttaattaagttgtttatccaa 8423023  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 129 - 157
Target Start/End: Original strand, 40709537 - 40709565
Alignment:
Q  129 tataagcacttaattaagttgtttatcca 157  Q
    |||||||||||||||||||||||||||||    
T  40709537 tataagcacttaattaagttgtttatcca 40709565  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 109 - 152
Target Start/End: Original strand, 55437420 - 55437464
Alignment:
Q  109 ttatatgataag-aattatactataagcacttaattaagttgttt 152  Q
    |||||||||||  |||||||||||||||| |||||||||||||||    
T  55437420 ttatatgataaccaattatactataagcatttaattaagttgttt 55437464  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 15)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 208 - 291
Target Start/End: Complemental strand, 10151328 - 10151245
Alignment:
Q  208 acttacaataggcttgccagtcacaactgctggtgaatgaccatgaaactttgaatattcatcaagaatccaagccattgtctg 291  Q
    |||||| ||||| || |||||||| ||||| || |||||||||||||| |||||||| ||||| || ||||| |||||||||||    
T  10151328 acttactataggttttccagtcactactgcaggagaatgaccatgaaattttgaatactcatctagtatccatgccattgtctg 10151245  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 109 - 158
Target Start/End: Original strand, 4247220 - 4247270
Alignment:
Q  109 ttatatgataagaa-ttatactataagcacttaattaagttgtttatccaa 158  Q
    |||||||||||| | |||| |||||||||||||||||||||||||||||||    
T  4247220 ttatatgataagtacttatgctataagcacttaattaagttgtttatccaa 4247270  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 43 - 120
Target Start/End: Complemental strand, 10400273 - 10400192
Alignment:
Q  43 ttatagcttattttaaaacaatttgactttatttttatctttcgtt----aatagcttatacagaactatttatatgataag 120  Q
    ||||||||||| | | ||||||||||||||||||||||||||  ||    ||||||||||||| ||  ||||||||||||||    
T  10400273 ttatagcttatatgataacaatttgactttatttttatcttttattataaaatagcttatacataaacatttatatgataag 10400192  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 123 - 158
Target Start/End: Original strand, 7268050 - 7268085
Alignment:
Q  123 ttatactataagcacttaattaagttgtttatccaa 158  Q
    ||||||||||| ||||||||||||||||||||||||    
T  7268050 ttatactataaacacttaattaagttgtttatccaa 7268085  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 123 - 157
Target Start/End: Original strand, 4003751 - 4003785
Alignment:
Q  123 ttatactataagcacttaattaagttgtttatcca 157  Q
    |||| ||||||||||||||||||||||||||||||    
T  4003751 ttatgctataagcacttaattaagttgtttatcca 4003785  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 35 - 77
Target Start/End: Original strand, 29274287 - 29274329
Alignment:
Q  35 aaaacagattatagcttattttaaaacaatttgactttatttt 77  Q
    ||||||| ||||||||||| | |||||||||||||||||||||    
T  29274287 aaaacagtttatagcttatatgaaaacaatttgactttatttt 29274329  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 124 - 158
Target Start/End: Original strand, 31807978 - 31808012
Alignment:
Q  124 tatactataagcacttaattaagttgtttatccaa 158  Q
    ||||| |||||||||||||||||||||||||||||    
T  31807978 tataccataagcacttaattaagttgtttatccaa 31808012  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 44 - 101
Target Start/End: Complemental strand, 1904818 - 1904762
Alignment:
Q  44 tatagcttattttaaaacaatttgactttatttttatctttcgttaatagcttataca 101  Q
    |||||||||| | |||| |||||||||||| |||||| ||| ||||||||||||||||    
T  1904818 tatagcttatataaaaataatttgacttta-ttttatatttagttaatagcttataca 1904762  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 44 - 101
Target Start/End: Complemental strand, 1909051 - 1908995
Alignment:
Q  44 tatagcttattttaaaacaatttgactttatttttatctttcgttaatagcttataca 101  Q
    |||||||||| | |||| |||||||||||| |||||| ||| ||||||||||||||||    
T  1909051 tatagcttatataaaaataatttgacttta-ttttatatttagttaatagcttataca 1908995  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 90 - 158
Target Start/End: Complemental strand, 3155129 - 3155060
Alignment:
Q  90 atagcttatacagaactatttatatgataagaa-ttatactataagcacttaattaagttgtttatccaa 158  Q
    |||||||||||| ||| |||||||||||||    |||| |||||||| ||||| ||||||||||||||||    
T  3155129 atagcttatacataaccatttatatgataaacgcttatgctataagcgcttaaataagttgtttatccaa 3155060  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 129 - 158
Target Start/End: Original strand, 14340960 - 14340989
Alignment:
Q  129 tataagcacttaattaagttgtttatccaa 158  Q
    ||||||||||||||||||||||||||||||    
T  14340960 tataagcacttaattaagttgtttatccaa 14340989  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 36 - 158
Target Start/End: Complemental strand, 2206601 - 2206474
Alignment:
Q  36 aaacagattatagcttattttaaaacaatttgactttatttttatctttcgtta-----atagcttatacagaactatttatatgataagaa-ttatact 129  Q
    |||||| | ||||||||| | |||||||||  |||||||||| |||||| ||||     ||| ||||||||||| |  ||||| |||||||  |||| ||    
T  2206601 aaacagttcatagcttatataaaaacaattatactttatttt-atcttttgttataaaaataacttatacagaaatgcttatacgataagagcttatgct 2206503  T
Q  130 ataagcacttaattaagttgtttatccaa 158  Q
    |||||||||||||||||  ||||||||||    
T  2206502 ataagcacttaattaagaagtttatccaa 2206474  T

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Target: chr6; HSP #13
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 123 - 155
Target Start/End: Original strand, 8470124 - 8470156
Alignment:
Q  123 ttatactataagcacttaattaagttgtttatc 155  Q
    |||||| ||||||||||||||||||||||||||    
T  8470124 ttatacgataagcacttaattaagttgtttatc 8470156  T

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Target: chr6; HSP #14
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 33 - 77
Target Start/End: Complemental strand, 22742380 - 22742336
Alignment:
Q  33 taaaaacagattatagcttattttaaaacaatttgactttatttt 77  Q
    |||||| || ||||||||||| | |||||||||||||||||||||    
T  22742380 taaaaatagcttatagcttatatgaaaacaatttgactttatttt 22742336  T

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Target: chr6; HSP #15
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 130 - 158
Target Start/End: Complemental strand, 34404350 - 34404322
Alignment:
Q  130 ataagcacttaattaagttgtttatccaa 158  Q
    |||||||||||||||||||||||||||||    
T  34404350 ataagcacttaattaagttgtttatccaa 34404322  T

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Target: chr8 (Bit Score: 35; Significance: 0.0000000002; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 89 - 154
Target Start/End: Original strand, 43208249 - 43208315
Alignment:
Q  89 aatagcttatacagaactatttatatgat-aagaattatactataagcacttaattaagttgtttat 154  Q
    ||||||||||||| || || ||||||||| ||   ||||||||||||||||||||||||||||||||    
T  43208249 aatagcttatacataaatacttatatgatgaacgtttatactataagcacttaattaagttgtttat 43208315  T

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Target: chr8; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 33 - 77
Target Start/End: Complemental strand, 45071216 - 45071172
Alignment:
Q  33 taaaaacagattatagcttattttaaaacaatttgactttatttt 77  Q
    ||||||||| ||||||||||| | |||||||||||||||||||||    
T  45071216 taaaaacagcttatagcttatataaaaacaatttgactttatttt 45071172  T

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Target: chr8; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 131 - 160
Target Start/End: Complemental strand, 3179681 - 3179652
Alignment:
Q  131 taagcacttaattaagttgtttatccaact 160  Q
    ||||||||||||||||||||||||||||||    
T  3179681 taagcacttaattaagttgtttatccaact 3179652  T

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Target: chr8; HSP #4
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 123 - 155
Target Start/End: Complemental strand, 6950255 - 6950223
Alignment:
Q  123 ttatactataagcacttaattaagttgtttatc 155  Q
    |||| ||||||||||||||||||||||||||||    
T  6950255 ttatgctataagcacttaattaagttgtttatc 6950223  T

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Target: chr7 (Bit Score: 34; Significance: 0.0000000007; HSPs: 7)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 43 - 158
Target Start/End: Complemental strand, 49060544 - 49060424
Alignment:
Q  43 ttatagcttattttaaaacaatttgactttatttttatctttcgtta-----atagcttatacagaactatttatatgataaga-attatactataagca 136  Q
    ||||||||||| | |||| |||||||||||||||| || ||| ||||     |||||||||||| || || ||||||||||||  |||||||||||||      
T  49060544 ttatagcttatataaaaataatttgactttatttt-attttttgttatagaaatagcttatacataaatacttatatgataagccattatactataagtg 49060446  T
Q  137 cttaattaagttgtttatccaa 158  Q
    |||||||||| |||||| ||||    
T  49060445 cttaattaagctgtttacccaa 49060424  T

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Target: chr7; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 38 - 77
Target Start/End: Complemental strand, 23918966 - 23918927
Alignment:
Q  38 acagattatagcttattttaaaacaatttgactttatttt 77  Q
    |||||||||||||||| | |||||||||||||||||||||    
T  23918966 acagattatagcttatatgaaaacaatttgactttatttt 23918927  T

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Target: chr7; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 30 - 77
Target Start/End: Original strand, 48157173 - 48157220
Alignment:
Q  30 ttgtaaaaacagattatagcttattttaaaacaatttgactttatttt 77  Q
    |||| |||||| |||||||||||| |||||||||||| ||||||||||    
T  48157173 ttgtgaaaacaaattatagcttatattaaaacaatttcactttatttt 48157220  T

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Target: chr7; HSP #4
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 130 - 158
Target Start/End: Original strand, 657842 - 657870
Alignment:
Q  130 ataagcacttaattaagttgtttatccaa 158  Q
    |||||||||||||||||||||||||||||    
T  657842 ataagcacttaattaagttgtttatccaa 657870  T

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Target: chr7; HSP #5
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 33 - 77
Target Start/End: Complemental strand, 28165105 - 28165061
Alignment:
Q  33 taaaaacagattatagcttattttaaaacaatttgactttatttt 77  Q
    |||| |||| ||||||||||| ||||||||||||||||| |||||    
T  28165105 taaagacagtttatagcttatattaaaacaatttgacttcatttt 28165061  T

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Target: chr7; HSP #6
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 122 - 158
Target Start/End: Original strand, 28691964 - 28692000
Alignment:
Q  122 attatactataagcacttaattaagttgtttatccaa 158  Q
    |||||| ||||| ||||||||||||||||||||||||    
T  28691964 attatattataaacacttaattaagttgtttatccaa 28692000  T

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Target: chr7; HSP #7
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 130 - 158
Target Start/End: Original strand, 39539904 - 39539932
Alignment:
Q  130 ataagcacttaattaagttgtttatccaa 158  Q
    |||||||||||||||||||||||||||||    
T  39539904 ataagcacttaattaagttgtttatccaa 39539932  T

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Target: scaffold0426 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: scaffold0426
Description:

Target: scaffold0426; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 123 - 158
Target Start/End: Complemental strand, 4062 - 4027
Alignment:
Q  123 ttatactataagcacttaattaagttgtttatccaa 158  Q
    |||||||||||||||| |||||||||||||||||||    
T  4062 ttatactataagcactcaattaagttgtttatccaa 4027  T

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Target: chr3 (Bit Score: 32; Significance: 0.00000001; HSPs: 6)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 123 - 158
Target Start/End: Complemental strand, 21574411 - 21574376
Alignment:
Q  123 ttatactataagcacttaattaagttgtttatccaa 158  Q
    ||||||||||||||||||||||||| ||||||||||    
T  21574411 ttatactataagcacttaattaagtagtttatccaa 21574376  T

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Target: chr3; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 123 - 158
Target Start/End: Original strand, 37308216 - 37308251
Alignment:
Q  123 ttatactataagcacttaattaagttgtttatccaa 158  Q
    |||| |||||||||||||||||||||||||||||||    
T  37308216 ttatgctataagcacttaattaagttgtttatccaa 37308251  T

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Target: chr3; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 106 - 154
Target Start/End: Complemental strand, 23785190 - 23785141
Alignment:
Q  106 tatttatatgataagaatt-atactataagcacttaattaagttgtttat 154  Q
    ||||||||||||||  ||| || |||||||||||||||||||||||||||    
T  23785190 tatttatatgataaacatttatgctataagcacttaattaagttgtttat 23785141  T

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Target: chr3; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 129 - 158
Target Start/End: Complemental strand, 34857424 - 34857395
Alignment:
Q  129 tataagcacttaattaagttgtttatccaa 158  Q
    ||||||||||||||||||||||||||||||    
T  34857424 tataagcacttaattaagttgtttatccaa 34857395  T

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Target: chr3; HSP #5
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 64 - 120
Target Start/End: Original strand, 659910 - 659965
Alignment:
Q  64 tttgactttatttttatctttcgttaatagcttatacagaactatttatatgataag 120  Q
    |||||||||||||| |||||| |||||||||||||| | ||  ||||||||||||||    
T  659910 tttgactttatttt-atcttttgttaatagcttatatataagcatttatatgataag 659965  T

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Target: chr3; HSP #6
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 122 - 158
Target Start/End: Complemental strand, 44240083 - 44240047
Alignment:
Q  122 attatactataagcacttaattaagttgtttatccaa 158  Q
    ||||| ||||||||||||| |||||||||||||||||    
T  44240083 attatgctataagcacttacttaagttgtttatccaa 44240047  T

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Target: chr2 (Bit Score: 32; Significance: 0.00000001; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 34 - 77
Target Start/End: Original strand, 7103540 - 7103583
Alignment:
Q  34 aaaaacagattatagcttattttaaaacaatttgactttatttt 77  Q
    |||||||| ||||||||||| |||||||| ||||||||||||||    
T  7103540 aaaaacagcttatagcttatattaaaacagtttgactttatttt 7103583  T

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Target: chr2; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 89 - 159
Target Start/End: Original strand, 10198594 - 10198665
Alignment:
Q  89 aatagcttatacagaactatttatatgataagaatt-atactataagcacttaattaagttgtttatccaac 159  Q
    ||||||||||||| || || |||||||||||| | | || |||||||||| ||||||||||||| |||||||    
T  10198594 aatagcttatacaaaagtacttatatgataagcactcatgctataagcacctaattaagttgttaatccaac 10198665  T

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Target: chr2; HSP #3
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 122 - 158
Target Start/End: Original strand, 5752750 - 5752786
Alignment:
Q  122 attatactataagcacttaattaagttgtttatccaa 158  Q
    ||||| ||||||||| |||||||||||||||||||||    
T  5752750 attatgctataagcagttaattaagttgtttatccaa 5752786  T

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Target: chr2; HSP #4
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 128 - 160
Target Start/End: Complemental strand, 5826174 - 5826142
Alignment:
Q  128 ctataagcacttaattaagttgtttatccaact 160  Q
    |||||||| ||||||||||||||||||||||||    
T  5826174 ctataagctcttaattaagttgtttatccaact 5826142  T

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Target: chr1 (Bit Score: 31; Significance: 0.00000004; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 128 - 158
Target Start/End: Complemental strand, 16322756 - 16322726
Alignment:
Q  128 ctataagcacttaattaagttgtttatccaa 158  Q
    |||||||||||||||||||||||||||||||    
T  16322756 ctataagcacttaattaagttgtttatccaa 16322726  T

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Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 35 - 77
Target Start/End: Original strand, 27738238 - 27738280
Alignment:
Q  35 aaaacagattatagcttattttaaaacaatttgactttatttt 77  Q
    |||||| |||||||||||| | |||||||||||||||||||||    
T  27738238 aaaacaaattatagcttatatgaaaacaatttgactttatttt 27738280  T

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Target: chr1; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 35 - 77
Target Start/End: Original strand, 34179930 - 34179972
Alignment:
Q  35 aaaacagattatagcttattttaaaacaatttgactttatttt 77  Q
    ||||||| ||||||||||  |||||||||||||||||||||||    
T  34179930 aaaacagtttatagcttagattaaaacaatttgactttatttt 34179972  T

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Target: chr1; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 123 - 157
Target Start/End: Original strand, 44936741 - 44936775
Alignment:
Q  123 ttatactataagcacttaattaagttgtttatcca 157  Q
    |||||||||||||| ||||||||||||||||||||    
T  44936741 ttatactataagcatttaattaagttgtttatcca 44936775  T

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