View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18107_low_19 (Length: 456)
Name: NF18107_low_19
Description: NF18107
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18107_low_19 |
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Alignment Details
Target: chr5 (Bit Score: 386; Significance: 0; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 386; E-Value: 0
Query Start/End: Original strand, 19 - 446
Target Start/End: Original strand, 39975689 - 39976116
Alignment:
| Q |
19 |
aacttggcttaggattcatcaagnnnnnnntaggatccaaacacttcaatccgcttgctgtggtcccataaaacatgctgacatgagtattcattgccac |
118 |
Q |
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||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39975689 |
aacttggcttaggattcatcaagaaaaaaataggatccaaacacttcaatccgcttgctgtggtcccataaaacatgctgacatgagtattcattgccac |
39975788 |
T |
|
| Q |
119 |
aggcactatctcattagccaactcagcaaacaatgaactaaaccttaacaaatatggttctctacatgttgttccttcaggacaaacaactaaatcacct |
218 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39975789 |
aggcactatctcattagccaactcagcaaacaatgaactaaaccttaacaaatatggttctctacatgttgttccttcaggacaaacaactaaatcacct |
39975888 |
T |
|
| Q |
219 |
tctcttagtaacttttgcattgtttcaccatcttgttttctgtctcttgttaatctcactgtttttattggtgctatgaactcagaaactttgcttaaac |
318 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39975889 |
tctcttagtaacttttgcattgtttcaccatcttgttttctgtctcttgttaatctcactgtttttattggtgctatgaactcagaaactttgcttaaac |
39975988 |
T |
|
| Q |
319 |
tatatgttactgcagttaatggctttgctaatgatgtgcttaagaaaacaggatccaacaatgtcctatgtgtgcatacaaacaaaacacctttgtttgg |
418 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39975989 |
tatatgttactgcagttaatggctttgctaatgatgtgcttaagaaaacaggatccaacaatgtcctatgtgtgcatacaaacaaaacacctttgtttgg |
39976088 |
T |
|
| Q |
419 |
ttttgnnnnnnnagggatagtgcctttg |
446 |
Q |
| |
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||||| |||||||||||||||| |
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| T |
39976089 |
ttttgtttttttagggatagtgcctttg |
39976116 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 140 - 202
Target Start/End: Original strand, 25552899 - 25552961
Alignment:
| Q |
140 |
ctcagcaaacaatgaactaaaccttaacaaatatggttctctacatgttgttccttcaggaca |
202 |
Q |
| |
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|||||||||||| | ||||||||||| ||| || ||||||||||| ||||||||||| ||||| |
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| T |
25552899 |
ctcagcaaacaaaggactaaaccttagcaagtaaggttctctacaagttgttccttctggaca |
25552961 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 83; Significance: 4e-39; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 83; E-Value: 4e-39
Query Start/End: Original strand, 54 - 276
Target Start/End: Original strand, 16147502 - 16147724
Alignment:
| Q |
54 |
tccaaacacttcaatccgcttgctgtggtcccataaaacatgctgacatgagtattcattgccacaggcactatctcattagccaactcagcaaacaatg |
153 |
Q |
| |
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|||||||| || ||||| || ||||| || ||||||||||| || |||| | |||||| ||||| || || ||||||| ||| | |||||||| | || |
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| T |
16147502 |
tccaaacattttaatccactagctgttgtaccataaaacatactcacattaacattcatagccactggaacaatctcatcagcaagttcagcaaaaagtg |
16147601 |
T |
|
| Q |
154 |
aactaaaccttaacaaatatggttctctacatgttgttccttcaggacaaacaactaaatcaccttctcttagtaacttttgcattgtttcaccatcttg |
253 |
Q |
| |
|
||||||||||||| ||||| ||||| ||||| ||||||||||||||||||||||||||||||||||| |||| ||| ||||||||||||| | |||||| |
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| T |
16147602 |
aactaaaccttaataaataaggttccctacaagttgttccttcaggacaaacaactaaatcaccttcacttaacaacctttgcattgtttccctatcttg |
16147701 |
T |
|
| Q |
254 |
ttttctgtctcttgttaatctca |
276 |
Q |
| |
|
|| ||| || |||||||| |||| |
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|
| T |
16147702 |
ttctctatcccttgttaaactca |
16147724 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 79; E-Value: 9e-37
Query Start/End: Original strand, 54 - 268
Target Start/End: Complemental strand, 16195433 - 16195219
Alignment:
| Q |
54 |
tccaaacacttcaatccgcttgctgtggtcccataaaacatgctgacatgagtattcattgccacaggcactatctcattagccaactcagcaaacaatg |
153 |
Q |
| |
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|||||||| || ||||| || ||||| || ||||||||||| || |||| | |||||| ||||| || || ||||||| ||| | |||||||| | || |
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| T |
16195433 |
tccaaacattttaatccactagctgttgtaccataaaacatactcacattatcattcatagccactggaacaatctcatcagcaatttcagcaaaaagtg |
16195334 |
T |
|
| Q |
154 |
aactaaaccttaacaaatatggttctctacatgttgttccttcaggacaaacaactaaatcaccttctcttagtaacttttgcattgtttcaccatcttg |
253 |
Q |
| |
|
||||||||||||| ||||| ||||| ||||| |||||||||||||| || ||||||||||||||||| || || ||| ||||||||||||| | |||||| |
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|
| T |
16195333 |
aactaaaccttaataaataaggttccctacaagttgttccttcagggcacacaactaaatcaccttccctaagcaacctttgcattgtttccctatcttg |
16195234 |
T |
|
| Q |
254 |
ttttctgtctcttgt |
268 |
Q |
| |
|
|| |||||||||||| |
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|
| T |
16195233 |
ttctctgtctcttgt |
16195219 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 37; Significance: 0.00000000001; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 352 - 420
Target Start/End: Complemental strand, 28538651 - 28538583
Alignment:
| Q |
352 |
atgtgcttaagaaaacaggatccaacaatgtcctatgtgtgcatacaaacaaaacacctttgtttggtt |
420 |
Q |
| |
|
||||||||| |||||| |||||||| | ||||||||||||||||||||| | ||| |||||||| |||| |
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|
| T |
28538651 |
atgtgcttaggaaaactggatccaaaagtgtcctatgtgtgcatacaaagataactcctttgttaggtt |
28538583 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 35; Significance: 0.0000000002; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 231 - 281
Target Start/End: Complemental strand, 50133706 - 50133656
Alignment:
| Q |
231 |
ttttgcattgtttcaccatcttgttttctgtctcttgttaatctcactgtt |
281 |
Q |
| |
|
|||||||||||||||||||||| ||||||| | ||| |||||||||||||| |
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| T |
50133706 |
ttttgcattgtttcaccatcttattttctgccccttattaatctcactgtt |
50133656 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 141 - 219
Target Start/End: Original strand, 38792285 - 38792363
Alignment:
| Q |
141 |
tcagcaaacaatgaactaaaccttaacaaatatggttctctacatgttgttccttcaggacaaacaactaaatcacctt |
219 |
Q |
| |
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|||| |||||| || ||||||||||| ||||| ||||||||||| || || ||||| ||||| ||||||| ||| |||| |
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| T |
38792285 |
tcagaaaacaaagagctaaaccttaataaataaggttctctacaagtggtcccttctggacacacaactacatcccctt |
38792363 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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