View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF18107_low_2 (Length: 865)
Name: NF18107_low_2
Description: NF18107
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18107_low_2 |
 | |
|
Alignment Details
Target: chr6 (Bit Score: 743; Significance: 0; HSPs: 7)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 743; E-Value: 0
Query Start/End: Original strand, 18 - 854
Target Start/End: Complemental strand, 30415531 - 30414695
Alignment:
| Q |
18 |
taaatatgatttagcagatataccttttgaaacaggaatcgtgccatgtcagtataatgttatacaaatatgagact--gttatttatccactgagaatt |
115 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||| |
|
|
| T |
30415531 |
taaatatgatttagcagatataccttttgaaacaggaatcgtgccatgtcaatataatgttatacaaatatgagactatgttatttatccactgagaatt |
30415432 |
T |
|
| Q |
116 |
tctaattgcatctctattgtatcactaacattttacagcttagaatcatggacatttcaaataatggtgctcctgtctggtgctcttcccaatccacagt |
215 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
30415431 |
tctaattgcatctctattgtatcactaacattttacagcttagaatcatggacatttcaaataatggtgctcctgtctggtgctcttcccaatccacagt |
30415332 |
T |
|
| Q |
216 |
tgcaaacttcagtcctttctatatggttagtttcttattagtcattattgttctgaggattattcccactatttgttgtagaaactttatgttcttattt |
315 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
30415331 |
tgcaaacttcagtcctttctatatggttagtttctttttagtcatt---gttctgaggattattcccactatttgttgtagaaactttatgttcttattt |
30415235 |
T |
|
| Q |
316 |
ctaactcagatacaaccattattgctttgttatctgtggctaaatttactttttcatctacagtgttaatatatccggtatgctttggatggtaccgttt |
415 |
Q |
| |
|
|||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
30415234 |
ctaactcagatacaaccattattgctttattatctgtggctaaatttactttttcatctacagtgttaatatatccggtatgctttggatggtaccgttt |
30415135 |
T |
|
| Q |
416 |
ggaattagtgtttctgcaaggttagtagtgcatgctaaactctat-aatttatattgtattagaataaaaaatagacaccaaaataatgtgcatgctatc |
514 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||| ||||||||| |
|
|
| T |
30415134 |
ggaattagtgtttctgcaaggttagtagtgcatgctaaactctattaatttatattgtatcagaataaaaaatagacaccaaaataatgtacatgctatc |
30415035 |
T |
|
| Q |
515 |
actaaaattaaaaatggtgacacatttattttgtttaaatatgtttttagttttcaactaattaggattagggtctgctcgtatgtttgggtctggtggt |
614 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |||||||||| ||||| |||||||||||| |
|
|
| T |
30415034 |
actaaaattaaaaatggtgacacatttattttgtttaattatgtttttagttttcaactaattaggattaaggtctgctcgcatgttcgggtctggtggt |
30414935 |
T |
|
| Q |
615 |
gtttttgtgttggttcgtttagtattgcggtggtgcggaggtgttgttttgggtctgtcgcgtgtggctttttgtgtgttctgatgtgtcttggctgttg |
714 |
Q |
| |
|
|||||||||||||||| | |||||||||||||||||||||||||| |||| |||||||||||||||||||| |||||||||| ||||||||||||||||| |
|
|
| T |
30414934 |
gtttttgtgttggttcatgtagtattgcggtggtgcggaggtgttattttaggtctgtcgcgtgtggctttgtgtgtgttctaatgtgtcttggctgttg |
30414835 |
T |
|
| Q |
715 |
tcgcattttgtcttatgtgtagtgcgagtggggcttggtgtatgtctttcaaccggctaagcaatgttcgtttcccggtgttctcctcgtcttgtggttc |
814 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
30414834 |
tcgcattttgtcttatgtgtagtgcgagtggggcttggtgtatgtctttcaaccggctaagcaatgttcgtttcccggtgttctcctcgtcttgtggttc |
30414735 |
T |
|
| Q |
815 |
acgctcgatgttcagaaccgtgtgggtttggtctgtgctc |
854 |
Q |
| |
|
|||||||||||||||||| ||||||||||||||||||||| |
|
|
| T |
30414734 |
acgctcgatgttcagaactgtgtgggtttggtctgtgctc |
30414695 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 116; E-Value: 1e-58
Query Start/End: Original strand, 75 - 260
Target Start/End: Complemental strand, 30432108 - 30431924
Alignment:
| Q |
75 |
tgttatacaaatatgagactgttatttatccactgagaatttctaattgcatctctatt-gtatcactaacattttacagcttagaatcatggacatttc |
173 |
Q |
| |
|
||||||||| |||||||||| || ||||||| |||||| |||||| |||||||||||| ||||||||||| ||||||||||||||||||||||||||| |
|
|
| T |
30432108 |
tgttatacatatatgagactatt--ttatccattgagaaattctaactgcatctctatttgtatcactaacgttttacagcttagaatcatggacatttg |
30432011 |
T |
|
| Q |
174 |
aaataatggtgctcctgtctggtgctcttcccaatccacagttgcaaacttcagtcctttctatatggttagtttcttattagtcat |
260 |
Q |
| |
|
|||||||||||||||| ||||||||||||||||| ||| | ||||||||||||||||||||||||||||||||||||| ||||||| |
|
|
| T |
30432010 |
aaataatggtgctcctttctggtgctcttcccaacccaaaattgcaaacttcagtcctttctatatggttagtttctttctagtcat |
30431924 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 67; E-Value: 3e-29
Query Start/End: Original strand, 148 - 250
Target Start/End: Complemental strand, 30380687 - 30380585
Alignment:
| Q |
148 |
ttacagcttagaatcatggacatttcaaataatggtgctcctgtctggtgctcttcccaatccacagttgcaaacttcagtcctttctatatggttagtt |
247 |
Q |
| |
|
|||||| |||||||||||||||||| || |||||||||| || ||||||||||||||||||||| | |||||||| ||||| |||||||||||||||||| |
|
|
| T |
30380687 |
ttacagtttagaatcatggacatttgaactaatggtgcttctttctggtgctcttcccaatccaaaattgcaaacatcagtgctttctatatggttagtt |
30380588 |
T |
|
| Q |
248 |
tct |
250 |
Q |
| |
|
||| |
|
|
| T |
30380587 |
tct |
30380585 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 51; E-Value: 9e-20
Query Start/End: Original strand, 146 - 248
Target Start/End: Complemental strand, 30476824 - 30476722
Alignment:
| Q |
146 |
ttttacagcttagaatcatggacatttcaaataatggtgctcctgtctggtgctcttcccaatccacagttgcaaacttcagtcctttctatatggttag |
245 |
Q |
| |
|
||||||||||||||||| |||| | | |||||||||| ||||| |||||| ||||||| |||||| | |||||||||||||| ||| |||||||||||| |
|
|
| T |
30476824 |
ttttacagcttagaatcttggatgtatgaaataatggttctcctctctggtactcttcctaatccaaaattgcaaacttcagtgcttgctatatggttag |
30476725 |
T |
|
| Q |
246 |
ttt |
248 |
Q |
| |
|
||| |
|
|
| T |
30476724 |
ttt |
30476722 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 128 - 228
Target Start/End: Complemental strand, 30372487 - 30372387
Alignment:
| Q |
128 |
tctattgtatcactaacattttacagcttagaatcatggacatttcaaataatggtgctcctgtctggtgctcttcccaatccacagttgcaaacttcag |
227 |
Q |
| |
|
||||||||||||||| ||| | | || ||||||||||||| ||||||| ||||| | ||||| ||||||||||||||||||||| |||||||| |||| |
|
|
| T |
30372487 |
tctattgtatcactaccatgtcatagtttagaatcatggaaatttcaattaatgctcctcctatctggtgctcttcccaatccaatattgcaaacatcag |
30372388 |
T |
|
| Q |
228 |
t |
228 |
Q |
| |
|
| |
|
|
| T |
30372387 |
t |
30372387 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 321 - 460
Target Start/End: Complemental strand, 30431868 - 30431729
Alignment:
| Q |
321 |
tcagatacaaccattattgctttgttatctgtggctaaatttactttttcatctacagtgttaatatatccggtatgctttggatggtaccgtttggaat |
420 |
Q |
| |
|
||||||||||| |||||| |||||||| | || | |||||||| |||||||| |||| ||||| |||| |||||| |||||||| |||| ||||| | |
|
|
| T |
30431868 |
tcagatacaacatttattgttttgttatatatgaccaaatttacattttcatcctcagtattaatgtatctggtatgttttggatgataccatttggggt |
30431769 |
T |
|
| Q |
421 |
tagtgtttctgcaaggttagtagtgcatgctaaactctat |
460 |
Q |
| |
|
|||||| ||| ||||||||| |||||||| | |||||| |
|
|
| T |
30431768 |
cagtgttgctggaaggttagtcttgcatgctgagctctat |
30431729 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #7
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 146 - 248
Target Start/End: Complemental strand, 30470455 - 30470353
Alignment:
| Q |
146 |
ttttacagcttagaatcatggacatttcaaataatggtgctcctgtctggtgctcttcccaatccacagttgcaaacttcagtcctttctatatggttag |
245 |
Q |
| |
|
|||| ||||||||||||||||| | | |||||||||||||||| || ||| ||||||| |||||| | |||||||| || || |||||| |||||| || |
|
|
| T |
30470455 |
ttttgcagcttagaatcatggatgtatgaaataatggtgctcctatccggtactcttcctaatccaaaattgcaaacatcggtactttctttatggtaag |
30470356 |
T |
|
| Q |
246 |
ttt |
248 |
Q |
| |
|
||| |
|
|
| T |
30470355 |
ttt |
30470353 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University