View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18107_low_22 (Length: 446)
Name: NF18107_low_22
Description: NF18107
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18107_low_22 |
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Alignment Details
Target: chr1 (Bit Score: 276; Significance: 1e-154; HSPs: 5)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 276; E-Value: 1e-154
Query Start/End: Original strand, 1 - 284
Target Start/End: Complemental strand, 34260105 - 34259822
Alignment:
| Q |
1 |
atcaggctatatcaaatattgtattttttgcgtacgaagttctgttaaagaacatacaaggatatcaagaggatttccatgacttgcaggatcttccttc |
100 |
Q |
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| T |
34260105 |
atcaggctatatcaaatattgtattttttgcgtacgaagttctgtttaagaacatacaaggatatcaagaggatttccatgacttgcaggatcttccttc |
34260006 |
T |
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| Q |
101 |
ataccttcaagtattttagcatacctttttgaaagaaatgaaccaaaataagattcaatattacaattaacaacaatttgaattgcttaggataaaaaca |
200 |
Q |
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| T |
34260005 |
atatcttcaagtattttagcatacctttttgaaagaaatgaaccaaaataagattcaatattacaattaacaacaatttgaattgcttaggataaaaaca |
34259906 |
T |
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| Q |
201 |
gacattacaacctttgagcataaatttcggctttatttgcagcatcaggaacagaagtatcactcgcagcacgcttcctgtacc |
284 |
Q |
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| T |
34259905 |
gacattacaacctttgagcataaatttcggctttatttgcagcatcaggaacagaagtatcactcgcagcacgcttcctgtacc |
34259822 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 97; E-Value: 2e-47
Query Start/End: Original strand, 37 - 201
Target Start/End: Complemental strand, 34250104 - 34249941
Alignment:
| Q |
37 |
aagttctgttaaagaacatacaaggatatcaagaggatttccatgacttgcaggatcttccttcataccttcaagtattttagcatacctttttgaaaga |
136 |
Q |
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| T |
34250104 |
aagttctgataaagaacatacaaggatatcaagaggatcgccatgacttgcaggatctttctccaaatcttcaagtattttagcatacctttttgaaaga |
34250005 |
T |
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| Q |
137 |
aatgaaccaaaataagattcaatattacaattaacaacaatttgaattgcttaggataaaaacag |
201 |
Q |
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| T |
34250004 |
aatgca-caaaagaaaatgcaatattgcaattaacaacaatttgaattacctaggataaagacag |
34249941 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 92; E-Value: 2e-44
Query Start/End: Original strand, 339 - 430
Target Start/End: Complemental strand, 34259767 - 34259676
Alignment:
| Q |
339 |
ccttgttctgagagaacatacttgtaagaggggataccactgcaaaagagattaatccaagataactcagtgggagtggggacttttggatc |
430 |
Q |
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| T |
34259767 |
ccttgttctgagagaacatacttgtaagaggggataccactgcaaaagagattaatccaagataactcagtgggagtggggacttttggatc |
34259676 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 209 - 284
Target Start/End: Complemental strand, 34249846 - 34249771
Alignment:
| Q |
209 |
aacctttgagcataaatttcggctttatttgcagcatcaggaacagaagtatcactcgcagcacgcttcctgtacc |
284 |
Q |
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| T |
34249846 |
aacctttgagcaaaaatttcagctttatttgctgcatcaggaacagaagtatcactctcagcacgtttcctgtacc |
34249771 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 347 - 416
Target Start/End: Complemental strand, 34249693 - 34249624
Alignment:
| Q |
347 |
tgagagaacatacttgtaagaggggataccactgcaaaagagattaatccaagataactcagtgggagtg |
416 |
Q |
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| T |
34249693 |
tgagagatcatacttgtaggaggggataccactgtgtaggagattaatccaagataactcagtgggagtg |
34249624 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 210 - 280
Target Start/End: Original strand, 20869633 - 20869703
Alignment:
| Q |
210 |
acctttgagcataaatttcggctttatttgcagcatcaggaacagaagtatcactcgcagcacgcttcctg |
280 |
Q |
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| T |
20869633 |
acctttgagcaaatttttcagctttttctgcagcattgggaacagaagtatcactctctgcacgcttcctg |
20869703 |
T |
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