View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18107_low_23 (Length: 430)
Name: NF18107_low_23
Description: NF18107
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18107_low_23 |
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Alignment Details
Target: chr1 (Bit Score: 168; Significance: 7e-90; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 168; E-Value: 7e-90
Query Start/End: Original strand, 217 - 414
Target Start/End: Complemental strand, 47198946 - 47198746
Alignment:
| Q |
217 |
aagctaaatggcaaggatctattataatccactaaagatccttttctaatttaaa-gattgcaaagtaatacttct---aactcacttatttcaatgtaa |
312 |
Q |
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| T |
47198946 |
aagctaaatggcaaggatctattataatctactaaagatccttttctaatttaaaagattgcaa-gtaatacttcttctaactcacttatttcaatgtaa |
47198848 |
T |
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| Q |
313 |
ctttaaattcaatgcataaacctcctccagaaccaatgttgtttccacactgtctcagccatatcttcaataggtatattctttgtctctggaatcaaaa |
412 |
Q |
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| T |
47198847 |
ctttaaattcaatgcataaacctcctccagaaccaatgttgtttccacactgtctcagccatatcttcaataggtatattctttgtctctggaatcaaaa |
47198748 |
T |
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| Q |
413 |
ac |
414 |
Q |
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|| |
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| T |
47198747 |
ac |
47198746 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 158; E-Value: 6e-84
Query Start/End: Original strand, 6 - 187
Target Start/End: Complemental strand, 47199120 - 47198939
Alignment:
| Q |
6 |
ggaggagcacagattcaagaagtttttgtagctcaatgaaaatacctctcctaaaagttacaaaagtggatctcaaatgaagaattccaaatgaaatatt |
105 |
Q |
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| T |
47199120 |
ggaggaacactgattcaagaagtttttgtagctcaatgaaaatacctctcctaaaagttacaaaagtggatctcaaatgaagaattccaaatgaaatatt |
47199021 |
T |
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| Q |
106 |
tcatttataataattgaagaagtacaatcactgaatgtaatgaaaataattatgagcgtaaaagataaatgcttaaactaaa |
187 |
Q |
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| T |
47199020 |
tcatttataataatggaagaagtacaataactgaatgtaatgaaaataattatgagcgtaaaagataaatggttaagctaaa |
47198939 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 312 - 413
Target Start/End: Complemental strand, 47186309 - 47186208
Alignment:
| Q |
312 |
actttaaattcaatgcataaacctcctccagaaccaatgttgtttccacactgtctcagccatatcttcaataggtatattctttgtctctggaatcaaa |
411 |
Q |
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||||||||||||||||||||||||| |||||||||||||||||||||| ||| ||||||||||||||||||| ||||||||||||||||||||||| ||| |
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| T |
47186309 |
actttaaattcaatgcataaacctcttccagaaccaatgttgtttccatactttctcagccatatcttcaatgggtatattctttgtctctggaataaaa |
47186210 |
T |
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| Q |
412 |
aa |
413 |
Q |
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|| |
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| T |
47186209 |
aa |
47186208 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 39; Significance: 0.0000000000006; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 327 - 401
Target Start/End: Original strand, 748369 - 748443
Alignment:
| Q |
327 |
cataaacctcctccagaaccaatgttgtttccacactgtctcagccatatcttcaataggtatattctttgtctc |
401 |
Q |
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|||||||||| |||||||||||||||||||||| ||| |||| | ||| |||||||| ||||| ||||| ||||| |
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| T |
748369 |
cataaacctcttccagaaccaatgttgtttccatactctctcggtcatttcttcaattggtatgttcttggtctc |
748443 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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