View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18107_low_26 (Length: 404)
Name: NF18107_low_26
Description: NF18107
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18107_low_26 |
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Alignment Details
Target: chr3 (Bit Score: 371; Significance: 0; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 371; E-Value: 0
Query Start/End: Original strand, 1 - 386
Target Start/End: Original strand, 26324844 - 26325230
Alignment:
| Q |
1 |
aatagtatctaacggtaatcaactgataataaatttgaaaagtcgtgtttcttggttttatttgcaaatcccaaataaaaaataaccacgtttcaaaata |
100 |
Q |
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| T |
26324844 |
aatagtatctaacggtaatcaactgataataaatttgaaaagtcgtgtttcttggttttatttgcaaatcccaaataaaaaataaccacgtttcaaaata |
26324943 |
T |
|
| Q |
101 |
aacaaactgaaacgacttcatgcaattttccaacggtaattaaccgtcaattgcacctctttgacatatatataataatttccatctcattcatcaaatt |
200 |
Q |
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| T |
26324944 |
aacaaactgaaacgacttcatgcaattttccaacggtaattaaccgtcaattgcacctctttgacatatatataataatttccatctcattcatcaaatt |
26325043 |
T |
|
| Q |
201 |
ctttcattctctttttgtttcatcaaacggtttttatccaacttttatttctggcggcagcgacgcttttatttagcgccgctactgccatcaccatcat |
300 |
Q |
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| T |
26325044 |
ctttcattctctttttgtttcatcaaacggtttttatccaactttcatttctggcggcagcgacgcttttatttagcgccgctactgccatcaccatcat |
26325143 |
T |
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| Q |
301 |
tccataaacaatttttctc-aaagttttgcttccaccatggcaaacagaaaaaacaatccaagtattgaagatgcaacgtttaaatt |
386 |
Q |
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| T |
26325144 |
tccataaacaatttttctcaaaagttttgcttccaccatggcaaacagaaaaaacaatccaagtattgaaggtgcaacgtttaaatt |
26325230 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 105 - 162
Target Start/End: Complemental strand, 48320906 - 48320850
Alignment:
| Q |
105 |
aactgaaacgacttcatgcaattttccaacggtaattaaccgtcaattgcacctcttt |
162 |
Q |
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| T |
48320906 |
aactgaaacgacttcatgca-ttttcaaacggtaattaaccgccaattgcacctcttt |
48320850 |
T |
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